Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05-
19] 261 sequences; 23,367,123 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq104 192 2e-43
seq74 138 3e-27
seq210 120 9e-22
seq241 95.1 4e-14
>seq104
Length=3444964
Score = 192 bits (212), Expect = 2e-43
Identities = 487/734 (66%), Gaps = 14/734 (2%)
Strand=Plus/Plus
Query 349203 TAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAG 349262
|||| |||||||| ||||| || || || || || | | | | | |||| || | |
Sbjct 2325085 TAGGTATCGATTTGGGTACCACGTACTCCTGCGTGGGTATCTTCCGTGATGACCGCATTG 2325144
Query 349263 AAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAA 349322
|||| || || || || || || ||| | || || || || | |||||| || || || |
Sbjct 2325145 AAATCATCGCCAACGACCAGGGAAACCGCACCACTCCCTCCTTCGTTGCCTTCACAGACA 2325204
Query 349323 CTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGG 349382
| |||||| | ||||| ||| | ||||| || || | || || || | || || |
Sbjct 2325205 CCGAGCGTCTCATTGGAGATGCCGCAAAGAACCAGGTCGCCATGAACCCTATCAACACCG 2325264
Query 349383 TTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGAC----AAATCTACACAATC 349437
| || ||||||||||| || ||||| | ||||| | ||| | || || |
Sbjct 2325265 TCTTCGATGCTAAGCGTCTCATTGGACGCAAGTTCAAC-GACGCCGAGGTC----CAGGC 2325319
Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497
|| | || || || || || | ||||| | | |||| | | || || || | |
Sbjct 2325320 CGACATGAAGCACTTCCCCTTCAAGGTTGT-CGAGAAGA--GCGGCAAGCCCATCGTCCA 2325376
Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557
||| || | || || || | || || || || || ||||| || || ||||| |
Sbjct 2325377 GGTCGAGTTCAAGGGCGAGGAGAAGCAGTTCACCCCTGAGGAAATCTCCTCCATGGTCCT 2325436
Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617
|| ||| || | || || || ||| | |||| || || | | ||||| ||
Sbjct 2325437 CACCAAGATGCGTGAGACCGCCGAGGCCTATCTCGGTGGCACCGTCAACAACGCTGTCAT 2325496
Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677
||||| || ||||| || || || |||||||| || || || || || || |||
Sbjct 2325497 CACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAAGCTACTAAGGACGCCGGTCTCAT 2325556
Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737
||| || | || || || | || || || || ||||||||||| || ||||| || ||
Sbjct 2325557 TGCCGGTCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTGCTATTGCCTACGG 2325616
Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797
|| || || | | |||| || ||| |||| || || ||| | |||||||||||
Sbjct 2325617 TCTCGACAAGAAGGCTGACGGTGAGCGCAATGTTCTCATCTTCGATCTCGGTGGTGGTAC 2325676
Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857
|| ||||| || || || || | |||||||| || || ||||| || | ||||| ||
Sbjct 2325677 CTTCGATGTCTCCCTCCTGACCATCGAAGAGGGTATCTTCGAAGTCAAGTCCACTGCCGG 2325736
Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917
||| || || | ||||| || || ||||| || |||||||| || || || || ||
Sbjct 2325737 TGACACTCACTTGGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTCGTCAACGA 2325796
Query 349918 ATTTAAGCGTCAAG 349931
||| ||||| ||||
Sbjct 2325797 ATTCAAGCG-CAAG 2325809
>seq74
Length=260272
Score = 138 bits (152), Expect = 3e-27
Identities = 184/256 (72%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 378191 TAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAG 378250
||||||| | ||||| | ||| || | ||| ||| ||||||||||| | ||
Sbjct 120834 TAACCATGACCTCTTCCAGTGCCTTGACAAGCTTTCGCTGGATATAACCAGTCTCCGCAG 120893
Query 378251 TTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAG 378310
|||| || ||||| ||||| ||||| | |||||| |||| || |||||||| ||||| |
Sbjct 120894 TTTTGACAGCAGTGTCAATCAAACCTTCGCGACCAGCCATAGCGTGGAAGAAGAATTCGG 120953
Query 378311 TAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCAT 378370
| || || ||||||| | | | || |||| | ||||| | | |||| |||| ||
Sbjct 120954 TGGGTGTCAGTCCACGGAGATACGAGTTCTCGACGAATCCACGAGATTCTGGAGAATAAT 121013
Query 378371 CATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCAT 378430
||| |||||| |||| || ||||| |||| | ||| || | ||||| || ||||| |
Sbjct 121014 CATCTTTTGTGAAATGTGGCAATGTCCGATATTTAAATCCGAAAGGAATACGCTTTCCTT 121073
Query 378431 CAACATTCTGTTGACC 378446
|||| |||||||||
Sbjct 121074 CAACTGACTGTTGACC 121089
Score = 89.7 bits (98), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505
||||| | || || |||||||| | ||||| ||| || || | |||||||||||
Sbjct 120074 ATTTCCTTAAGACGAGGCACACCTAGCGTAACGTTC---TTTGAGGACACACCAGCAAAA 120130
Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565
|| ||||| || ||||| | || |||| ||||| ||||||||||| || || | ||
Sbjct 120131 TGAAAAGTGTTGAGAGTCATCTGGGTAGCCGGCTCTCCAATTGACTGGGCAGCCAACACA 120190
Query 377566 CCAACCATTTCTCCAGGATT 377585
|||||||| || || |||||
Sbjct 120191 CCAACCATCTCACCGGGATT 120210
>seq210
Length=1335347
Score = 120 bits (132), Expect = 9e-22
Identities = 144/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605
||| || || || |||||||| || | || || || || ||||| ||||||||||||||
Sbjct 1131565 CTCCTTCTGGATGTTATAATCGGACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAA 1131506
Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665
||| ||||| ||||| || || ||||| ||||| || ||||| || || | || || ||
Sbjct 1131505 GATGAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTT 1131446
Query 140666 ATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTA 140724
|| |||| || | ||| ||| ||||| || || | || || || || ||||| || |
Sbjct 1131445 GTCTATCGTGTC-GCTGGATTCTACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGA 1131387
Query 140725 CAAAAATCTGCAT 140737
| || ||||||||
Sbjct 1131386 CGAAGATCTGCAT 1131374
Score = 114 bits (126), Expect = 4e-20
Identities = 159/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||| || ||||| | | || ||||| || ||||| || || ||||| || || || ||
Sbjct 1131376 CATGCCTCCACGCAGACGAAGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTC 1131317
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || |||||||| |||||||| ||||||||||| || ||
Sbjct 1131316 CGAGAGGGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGG 1131257
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685
||| || || || || ||||| || || | || || || || || | || | ||| ||
Sbjct 1131256 AGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTC-GCTGGATT 1131198
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
| || ||||| || | ||||| ||||| || ||||| ||
Sbjct 1131197 CGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 1131158
>seq241
Length=1026449
Score = 95.1 bits (104), Expect = 4e-14
Identities = 88/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 378213 TTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAA 378272
||| ||||||| |||||| |||||||| |||| ||| || || || |||||||| ||
Sbjct 461754 TTTCATAAGTCTTCGAGACATATAACCTGTTTCTGCAGTCTTCACGGCGGTATCAATCAA 461695
Query 378273 ACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCA 378324
||| |||| ||| ||| || ||||| | ||||| |||||||||||||||
Sbjct 461694 ACCCTCACGGCCAGACATAGCGTGGAAAAGAAATTCGGTAGGAGTAAGTCCA 461643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515249332894583
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |