Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq104 192 2e-43 seq74 138 3e-27 seq210 120 9e-22 seq241 95.1 4e-14 >seq104 Length=3444964 Score = 192 bits (212), Expect = 2e-43 Identities = 487/734 (66%), Gaps = 14/734 (2%) Strand=Plus/Plus Query 349203 TAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAG 349262 |||| |||||||| ||||| || || || || || | | | | | |||| || | | Sbjct 2325085 TAGGTATCGATTTGGGTACCACGTACTCCTGCGTGGGTATCTTCCGTGATGACCGCATTG 2325144 Query 349263 AAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAA 349322 |||| || || || || || || ||| | || || || || | |||||| || || || | Sbjct 2325145 AAATCATCGCCAACGACCAGGGAAACCGCACCACTCCCTCCTTCGTTGCCTTCACAGACA 2325204 Query 349323 CTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGG 349382 | |||||| | ||||| ||| | ||||| || || | || || || | || || | Sbjct 2325205 CCGAGCGTCTCATTGGAGATGCCGCAAAGAACCAGGTCGCCATGAACCCTATCAACACCG 2325264 Query 349383 TTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGAC----AAATCTACACAATC 349437 | || ||||||||||| || ||||| | ||||| | ||| | || || | Sbjct 2325265 TCTTCGATGCTAAGCGTCTCATTGGACGCAAGTTCAAC-GACGCCGAGGTC----CAGGC 2325319 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 || | || || || || || | ||||| | | |||| | | || || || | | Sbjct 2325320 CGACATGAAGCACTTCCCCTTCAAGGTTGT-CGAGAAGA--GCGGCAAGCCCATCGTCCA 2325376 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 ||| || | || || || | || || || || || ||||| || || ||||| | Sbjct 2325377 GGTCGAGTTCAAGGGCGAGGAGAAGCAGTTCACCCCTGAGGAAATCTCCTCCATGGTCCT 2325436 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || ||| || | || || || ||| | |||| || || | | ||||| || Sbjct 2325437 CACCAAGATGCGTGAGACCGCCGAGGCCTATCTCGGTGGCACCGTCAACAACGCTGTCAT 2325496 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||||| || ||||| || || || |||||||| || || || || || || ||| Sbjct 2325497 CACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAAGCTACTAAGGACGCCGGTCTCAT 2325556 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||| || | || || || | || || || || ||||||||||| || ||||| || || Sbjct 2325557 TGCCGGTCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTGCTATTGCCTACGG 2325616 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | | |||| || ||| |||| || || ||| | ||||||||||| Sbjct 2325617 TCTCGACAAGAAGGCTGACGGTGAGCGCAATGTTCTCATCTTCGATCTCGGTGGTGGTAC 2325676 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || ||||| || || || || | |||||||| || || ||||| || | ||||| || Sbjct 2325677 CTTCGATGTCTCCCTCCTGACCATCGAAGAGGGTATCTTCGAAGTCAAGTCCACTGCCGG 2325736 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || | ||||| || || ||||| || |||||||| || || || || || Sbjct 2325737 TGACACTCACTTGGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTCGTCAACGA 2325796 Query 349918 ATTTAAGCGTCAAG 349931 ||| ||||| |||| Sbjct 2325797 ATTCAAGCG-CAAG 2325809 >seq74 Length=260272 Score = 138 bits (152), Expect = 3e-27 Identities = 184/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 378191 TAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAG 378250 ||||||| | ||||| | ||| || | ||| ||| ||||||||||| | || Sbjct 120834 TAACCATGACCTCTTCCAGTGCCTTGACAAGCTTTCGCTGGATATAACCAGTCTCCGCAG 120893 Query 378251 TTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAG 378310 |||| || ||||| ||||| ||||| | |||||| |||| || |||||||| ||||| | Sbjct 120894 TTTTGACAGCAGTGTCAATCAAACCTTCGCGACCAGCCATAGCGTGGAAGAAGAATTCGG 120953 Query 378311 TAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCAT 378370 | || || ||||||| | | | || |||| | ||||| | | |||| |||| || Sbjct 120954 TGGGTGTCAGTCCACGGAGATACGAGTTCTCGACGAATCCACGAGATTCTGGAGAATAAT 121013 Query 378371 CATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCAT 378430 ||| |||||| |||| || ||||| |||| | ||| || | ||||| || ||||| | Sbjct 121014 CATCTTTTGTGAAATGTGGCAATGTCCGATATTTAAATCCGAAAGGAATACGCTTTCCTT 121073 Query 378431 CAACATTCTGTTGACC 378446 |||| ||||||||| Sbjct 121074 CAACTGACTGTTGACC 121089 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||| | || || |||||||| | ||||| ||| || || | ||||||||||| Sbjct 120074 ATTTCCTTAAGACGAGGCACACCTAGCGTAACGTTC---TTTGAGGACACACCAGCAAAA 120130 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 || ||||| || ||||| | || |||| ||||| ||||||||||| || || | || Sbjct 120131 TGAAAAGTGTTGAGAGTCATCTGGGTAGCCGGCTCTCCAATTGACTGGGCAGCCAACACA 120190 Query 377566 CCAACCATTTCTCCAGGATT 377585 |||||||| || || ||||| Sbjct 120191 CCAACCATCTCACCGGGATT 120210 >seq210 Length=1335347 Score = 120 bits (132), Expect = 9e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| || || || |||||||| || | || || || || ||||| |||||||||||||| Sbjct 1131565 CTCCTTCTGGATGTTATAATCGGACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAA 1131506 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 ||| ||||| ||||| || || ||||| ||||| || ||||| || || | || || || Sbjct 1131505 GATGAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTT 1131446 Query 140666 ATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTA 140724 || |||| || | ||| ||| ||||| || || | || || || || ||||| || | Sbjct 1131445 GTCTATCGTGTC-GCTGGATTCTACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGA 1131387 Query 140725 CAAAAATCTGCAT 140737 | || |||||||| Sbjct 1131386 CGAAGATCTGCAT 1131374 Score = 114 bits (126), Expect = 4e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || ||||| || ||||| || || ||||| || || || || Sbjct 1131376 CATGCCTCCACGCAGACGAAGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTC 1131317 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || |||||||| |||||||| ||||||||||| || || Sbjct 1131316 CGAGAGGGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGG 1131257 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 ||| || || || || ||||| || || | || || || || || | || | ||| || Sbjct 1131256 AGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTC-GCTGGATT 1131198 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 | || ||||| || | ||||| ||||| || ||||| || Sbjct 1131197 CGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 1131158 >seq241 Length=1026449 Score = 95.1 bits (104), Expect = 4e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 378213 TTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAA 378272 ||| ||||||| |||||| |||||||| |||| ||| || || || |||||||| || Sbjct 461754 TTTCATAAGTCTTCGAGACATATAACCTGTTTCTGCAGTCTTCACGGCGGTATCAATCAA 461695 Query 378273 ACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCA 378324 ||| |||| ||| ||| || ||||| | ||||| ||||||||||||||| Sbjct 461694 ACCCTCACGGCCAGACATAGCGTGGAAAAGAAATTCGGTAGGAGTAAGTCCA 461643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515249332894583