Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05-
19] 261 sequences; 23,367,123 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq241 161 1e-34
seq144 93.3 5e-14
seq1 93.3 5e-14
>seq241
Length=1026449
Score = 161 bits (178), Expect = 1e-34
Identities = 402/606 (66%), Gaps = 6/606 (1%)
Strand=Plus/Minus
Query 53179 GCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGT 53238
||| ||| || | | ||||| || ||| | |||||||||||||| ||| | ||
Sbjct 700265 GCCACAGCATATGATAATGCGAGTTGCCGTCGGTATCCACGGTGAGGACGTTGAGAAAGT 700206
Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298
||| || ||| | | ||| ||| || ||||| || || ||| | || || || ||
Sbjct 700205 AATTGAAACATACAATCTCATGTCCCAGAAATACTTCACCCATGCCTCTCCCACTCTCTT 700146
Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGA 53358
||| || || || || || || ||| | ||||||||| | | |||||||| ||
Sbjct 700145 CAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGA 700086
Query 53359 CTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGG 53418
| ||||| || |||||||| || || ||| ||||| || || ||| | ||
Sbjct 700085 CAGTATCGAAGGTATCTACGACACACTGAAGACCTGTGCTTTGATTTCAAAGACTGCTGG 700026
Query 53419 TGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACG 53476
|| |||||| | || || | ||| |||||| | ||| | || || ||
Sbjct 700025 AGGAATCGGTCTTAACG--TCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACC 699968
Query 53477 AACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTAC 53536
|||||| | || | |||||||| || ||||| || || ||||||||||| ||| | ||
Sbjct 699967 AACGGCTCCTCCAACGGAATCGTCCCCATGCTTCGTGTGTTCAACAACACTGCCAGATAT 699908
Query 53537 GTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595
||| |||||||||| ||||| | ||| | | || || |||||||| ||||| |||||
Sbjct 699907 GTCGACCAGGGTGGCAACAAGCGTCCAGGTG-CCTTTGCTATCTACCTGGAGCCATGGCA 699849
Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655
||| || || | ||||| || || || || ||| || || | ||||| | ||
Sbjct 699848 CGCTGATATCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTGC 699789
Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715
|||||| || || || |||||| ||| || | |||||| | || || ||| |
Sbjct 699788 CCGTGATCTATTCTTGGCCTTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGAA 699729
Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGA 53775
| || ||| ||| | ||||| || ||| || || | | ||||||||| ||
Sbjct 699728 TGGCGATTGGACCCTATTCTGCCCTAATGAGGCTCCTGGATTGGCTGATGTCTACGGAGA 699669
Query 53776 GGAGTT 53781
|||||
Sbjct 699668 AGAGTT 699663
>seq144
Length=62475
Score = 93.3 bits (102), Expect = 5e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827
|||||| || | | || | ||| || || || | || || ||||| || ||||||||
Sbjct 14435 GCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTT 14494
Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887
||||| ||| ||||||| |||||| || |||||||| || || ||||| |||||
Sbjct 14495 CTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATACCCTCGACGGCAGCAAA 14554
Query 74888 GGCGACAAGGCGTTGCGCGAA 74908
||| |||||||| || |||||
Sbjct 14555 GGCAACAAGGCGCTGTGCGAA 14575
>seq1
Length=4062027
Score = 93.3 bits (102), Expect = 5e-14
Identities = 227/339 (67%), Gaps = 20/339 (6%)
Strand=Plus/Minus
Query 118016 CCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGT 118075
||||||||||| ||||| ||||| ||| ||||| ||||||| ||||||||||
Sbjct 3907035 CCCTTGATATGACTGCCGTCATGATCCTGATCAGTCATAATCATCAAATGGCCGTACCGG 3906976
Query 118076 AAATCTC-----TCAGGGAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAA 118130
| ||| |||| |||| |||| ||| || | || | || ||||| |
Sbjct 3906975 AGGCCTCGAGTATCAG-----TATATTCCTTTTTATGCTGTAAGCCAATGAAATTTTTGA 3906921
Query 118131 GGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCG 118190
||| | ||| |||| | || | || | || || ||| || ||||||||| |
Sbjct 3906920 TGTTCTGGATTTCAGCATTCTTCGAGATTTGGTCTACGGAGGCATCTCGAACGTTGAGAA 3906861
Query 118191 GCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAAC-GCTCAAGCCGGCA 118249
| || || || |||||||| || ||||| |||| | |||||||| |||| ||||||
Sbjct 3906860 GTTTTCCTCGAAGTGGAAATACTCCAAAAAGGTCAGGTCCCACAACTGCTC-GGCCGGCC 3906802
Query 118250 ATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTG-CG 118308
||||| | |||| || || ||||| || || | || ||||| || ||| || |
Sbjct 3906801 ATAGCCAAACCCTTGGCGGAATCACCTTCAGTTAGGATGAGAGTACA----GTGATGTCC 3906746
Query 118309 A---TGAGTACCGGCCCAATTAGCATCATCCAGCTTCGG 118344
| | ||| |||||| ||| ||||| ||||||||
Sbjct 3906745 ATCTTTAGTGCCGGCCTTATTTGCATCTGTGAGCTTCGG 3906707
Score = 87.8 bits (96), Expect = 2e-12
Identities = 202/298 (68%), Gaps = 6/298 (2%)
Strand=Plus/Minus
Query 152770 TTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGA 152829
|||| || ||||||||||| || |||||| ||||| || ||||| ||||||| |
Sbjct 3907047 TTGATGAGTAAGCCCTTGATATGACTGCCGTCATGATCCTGATCAGTCATAATCATCAAA 3906988
Query 152830 CGACCGTAGCGCAGGTCACGTAGTGACCCGTAGA--CCTTTCCATGTTGAAGCCCGAGGA 152887
| ||||| || ||| | || ||| | | ||| | ||||| ||| || | || | ||
Sbjct 3906987 TGGCCGTACCGGAGGCCTCG-AGT-ATCAGTATATTCCTTTTTATGCTGTAAGCCAATGA 3906930
Query 152888 TCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAA 152947
||||||| ||| | ||| |||| | | | || | || | |||||| ||||
Sbjct 3906929 AATTTTTGATGTTCTGGATTTCAGCATTCTTCGAGATTTGGTCTACGGAGGCATCTCGAA 3906870
Query 152948 CATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAAC-GCTC 153006
| ||| | | ||||| || |||||||| || || || || | || ||||| ||||
Sbjct 3906869 CGTTGAGAAGTTTTCCTCGAAGTGGAAATACTCCAAAAAGGTCAGGTCCCACAACTGCTC 3906810
Query 153007 AGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGT 153064
| ||||| ||||| | | || || || ||||| || || | || || |||||||
Sbjct 3906809 -GGCCGGCCATAGCCAAACCCTTGGCGGAATCACCTTCAGTTAGGATGAGAGTACAGT 3906753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547214214707800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |