Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq210 170 5e-37 seq123 91.5 4e-13 >seq210 Length=1335347 Score = 170 bits (188), Expect = 5e-37 Identities = 157/199 (79%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 ||||||||||||| || || || || ||||| || ||||| ||| | |||||||||| Sbjct 1131156 TCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCG 1131215 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| ||||| |||||||| || || |||||||| ||||||||||| || | Sbjct 1131216 ACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAACGTCTCA 1131275 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || |||||||||||||| || || |||| || | || || ||| ||||||| | Sbjct 1131276 TCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAAAAGG 1131335 Query 178111 AATCAACACTGCATCTTGT 178129 ||||||| || || ||||| Sbjct 1131336 AATCAACTCTCCACCTTGT 1131354 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || ||||| ||||| || || || ||| | ||| Sbjct 1131377 CAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGCGAC 1131436 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||| |||||||| ||||| || || || |||||||| Sbjct 1131437 ACGATAGACAACGTCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACCAGCAG 1131496 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||||||||| || || || |||| || ||||||||||| || Sbjct 1131497 CGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATAACATC 1131556 Query 178104 CAAAAAGA 178111 || || || Sbjct 1131557 CAGAAGGA 1131564 Score = 125 bits (138), Expect = 2e-23 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||||||||||||||| | ||||| || || |||||||| Sbjct 1130870 TCACTGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACGTCAAGA 1130929 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || ||||| || |||||||| || || |||||||| |||| Sbjct 1130930 CCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTCGCAGGAA 1130989 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 |||||||||| || || | || || |||| || ||| |||| || || Sbjct 1130990 AACAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 1131038 >seq123 Length=229 Score = 91.5 bits (100), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || || || |||||||| ||||| || || ||| Sbjct 96 CAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGCG 153 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| ||||| || || || ||||||| Sbjct 154 ACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAGC 213 Query 178042 AACGACTTATCTTCGC 178057 | | || ||||| || Sbjct 214 AGAGGCTGATCTTTGC 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727174647634