Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20violaceum_20[genbank_20GCA_5F001651435.1_202016-05- 19] 261 sequences; 23,367,123 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq210 150 2e-31 seq104 105 6e-18 >seq210 Length=1335347 Score = 150 bits (166), Expect = 2e-31 Identities = 158/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || |||||||||||||| ||||| |||||||| Sbjct 1131075 GCCACCACGGAGACGAAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 1131016 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| |||||||| || || ||||| ||||||||||| ||||| | ||| Sbjct 1131015 GAGGGTGCGGCCGTCCTCGAGCTGTTTTCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGG 1130956 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| ||| | | | ||||||||| ||||||| Sbjct 1130955 GATGCCCTCCTTGTCCTGGATCTTGGTCTT-GACGTTGTCAATAGTGTCGCTGGACTCCA 1130897 Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838 |||| | || || || || || || Sbjct 1130896 CCTCGAGGGTGATAGTCTTGCCAGT 1130872 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || | || | ||||| ||||| ||||||||||||||| |||||||| ||||| Sbjct 1131600 CCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGAC 1131541 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||| || || || || || || ||||| ||||| | ||| Sbjct 1131540 AGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGA 1131481 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| ||| ||| ||| | | | |||||||| || || || Sbjct 1131480 ATACCTTCCTTGTCCTGGATCTTTGTCTT-GACGTTGTCTATCGTGTCGCTGGATTCTAC 1131422 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || ||||| |||||||| ||||| ||||| ||||||||| Sbjct 1131421 TTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATG 1131373 >seq104 Length=3444964 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| | ||| || || || ||| ||||||||||||||| ||||| Sbjct 1585620 ACCACCACCACGGAGACGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTC 1585679 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || || || |||| || ||||| || || ||||| ||||| ||||| ||||| | Sbjct 1585680 AGAAAGAGTACGGCCGTCCTCAAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGG 1585739 Query 41752 GGGAACGCTCTCCTTGTCCAT 41772 ||||| | ||||||||| || Sbjct 1585740 GGGAATTCCCTCCTTGTCTAT 1585760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302491733200