Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tuber_20melanosporum_20[genbank_20GCA_5F000151645.1_202010-05-03] 398 sequences; 124,945,702 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq342 134 2e-26 >seq342 Length=727325 Score = 134 bits (148), Expect = 2e-26 Identities = 349/524 (67%), Gaps = 6/524 (1%) Strand=Plus/Plus Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 ||||| | ||||| || |||| ||| || | | | || || | ||||| |||||| Sbjct 61118 ATATCCGCGTGCCATGGCTCCATGTAGATAGCAAAGGCCCCGGGTCTCTTGTTGCCTCCC 61177 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 || || | || || ||||| | |||| | ||||| |||||||| | ||| || || || Sbjct 61178 TGGTCAACATACCTGGCGGTATGATTAAACACTCTTAACATTGGCACAATGCCGTTAGAA 61237 Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACC 54309 |||||||||||||| |||||| ||| | |||||||| | | | || | || || Sbjct 61238 CTACCATTGGTCCCGGCAATATAGGAACCAGTAGCACGAAT-GCAGTGAATGTTGAGTCC 61296 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCT 54368 || || || || |||| || || | || || || |||| ||||| || || || | Sbjct 61297 AATACCGCCAGCAGTTTTTGAAATCATAGCACA-GGTCTTAAGGGTATCGTAAATACCAT 61355 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA-CTAGTT 54427 | || || | |||| ||| | |||||| || | || | | ||| || Sbjct 61356 CAATCGAGTCCCCTTTCATAGTAACCAAGAAACAGGACGAGAGTT-GAGGCGATGGTGTG 61414 Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 54487 || ||||| || | ||||| ||||| || ||||| | ||| ||| || || || Sbjct 61415 CCTGCATTGAAGAGAGTAGGCGAAGCATGGGTAAAATACTTTGAAGACGTGAGGTTATAT 61474 Query 54488 GTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547 ||||||||| | ||| | |||| | ||||||||| || || |||||||| | ||| Sbjct 61475 GTCTCGATAACCTTGTCGACATCCTCTCCATGAATTCCGACAGCCACACGCATAAGCATA 61534 Query 54548 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTT 54607 |||||||| | ||| | | || || || || | ||| || ||||||||| Sbjct 61535 TGCTGAGGACGCTCAGCAACTTTTCCATTGATGCGAAGAAGGTACGAACGCTCCAAAGTT 61594 Query 54608 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 || || ||||| || ||||| ||| || ||||| ||||| Sbjct 61595 TTGAAGCCAAAGTAATTGTAGTTAAAATCCTTATCGTAGATAAT 61638 Score = 95.1 bits (104), Expect = 1e-14 Identities = 235/352 (67%), Gaps = 10/352 (3%) Strand=Plus/Plus Query 53534 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC--AGCTTCTG 53591 || ||||||||||||| ||| | ||||||||| ||| | || | |||| ||| || | Sbjct 60458 AAACCTTGAACACCAACACCAACAGGTCTATGCCTCGTGTT--ACTTTTCCTAGCCTCAG 60515 Query 53592 GAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCA 53651 | | ||||| | || | ||| || || || ||||||||| ||| | || ||| || Sbjct 60516 GGACGGGATAGAAGTTGACATCGATGATCTTGTTGAGGTTTTTGATGACGACCTTGGTCA 60575 Query 53652 CATCCTTCAGTTTGAGAAAATC-AAATTGTCCATCT-ATTACAAACATGT----TCAATG 53705 | || | || ||| ||||| | | | || ||| | | ||||| | ||| | Sbjct 60576 CCTCGTGCAACTTGGCGAAATCGTACTCGCCCCTCTGAACATCAACATATGTAGGCAAGG 60635 Query 53706 CAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 53765 | | ||||||| ||||||||| || ||||||| || | ||| | | ||||| | Sbjct 60636 CCAACGATGCCAAATTACAAACTGCGACCTCATCAGGTGCACTATACTCCACAATCTCGG 60695 Query 53766 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 53825 | || ||||| | | |||||||| || || || || || || |||||| | Sbjct 60696 TACAGAGATTGGACGATCTAATGGTTCCCAAGTTCTGCTGGTTGGATTTGCGGTTACATG 60755 Query 53826 CATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 | ||||| || || ||||| || | ||||| ||| | |||| ||| | ||| Sbjct 60756 CGTCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCAGTTTGGGCTTCGAGAAT 60807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718646235040