Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tuber_20melanosporum_20[genbank_20GCA_5F000151645.1_202010-05-03] 398 sequences; 124,945,702 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq320 116 3e-21 seq342 105 6e-18 seq340 86.0 6e-12 >seq320 Length=806987 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||| |||| || || || |||||| |||| || || | || Sbjct 609942 ATGCAAATTTTCGTTAAAACTTTGACCGGAAAGACTATCACCCTCGAGGTGGAGTCTTCT 609883 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||| ||||| || | || || |||||| Sbjct 609882 GACACAATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATTCCTCCAGACCAG 609823 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || ||||| || |||||||| || | ||| | |||||||||| Sbjct 609822 CAGCGCTTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGTACTCTTTCCGATTATAAC 609763 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||| || || ||||| |||| ||| | || | ||||| Sbjct 609762 ATTCAGAAAGAGTCCACCCTTCACTTGGTTCTTCGTCTTCGTGGCGG 609716 >seq342 Length=727325 Score = 105 bits (116), Expect = 6e-18 Identities = 202/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 22307 GACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG--ATCC 22364 || |||||||| ||||||||||| || |||| || ||| || ||||| || Sbjct 59862 GAGATTTCCCAAACGGTCTTGTAAAGAGCTTTGATATCATCCGGAAT--ATTCGGGATAT 59919 Query 22365 TCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGA 22424 |||||| || || | ||||| ||| || || ||||| ||||||| || | Sbjct 59920 TCTGGATACTGCCATTCTCCGCAATGATACGATTCTTCATGTTATCGCTCCACAATCCCA 59979 Query 22425 TGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGC 22484 || | | ||| || | || | |||| || | |||||||||||| | ||| || | Sbjct 59980 TGTCAACGAGATCCTTCAACAACCAAGGGTTGACAATTTGAAACTCGCCAGCCAAAACTC 60039 Query 22485 GGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAG 22544 | || |||||||| || || | || || ||| | || ||| ||||| ||||||| Sbjct 60040 GACGGGAATAAATGTTCGAGGTATAAGGCTCAAAACACTCGTTGAATCCCAAGATCTGAG 60099 Query 22545 CGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTT 22600 |||||||||||| ||||| || |||| || || || || | | |||||||||| Sbjct 60100 AGGTCGAAGCGGTGGGCATAGGAGCCACAAGAAGGGAATTACGGAGGCCGTGCTTT 60155 >seq340 Length=732193 Score = 86.0 bits (94), Expect = 6e-12 Identities = 195/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| || || || || || || ||| | || || | || || Sbjct 108332 ATTTGGCAAATGTACAAGAAAGCTGAGGCCTCCTTCTGGGTTGCTGAGGAGATTGATCTT 108273 Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || || ||| || ||| || || |||| | ||||||| Sbjct 108272 TCAAAGGACATGCATGACTGGAGCGACCGCCTAAATGATGATGAGCGCTATTTTATCTCG 108213 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || ||||| ||||| || ||||||||||| || ||||| | || || | Sbjct 108212 CACGTTCTTGCCTTTTTTGCCGCGTCTGATGGTATTGTCAATGAGAACCTTGTTCAACGC 108153 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || | || || || | | ||||| | || || ||||| |||||| | || Sbjct 108152 TTCAGTAACGAGGTTCAGATTCCTGAGGCCCGTTGTTTCTACGGTTTTCAAATTATGATG 108093 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || || ||||| || || | ||||| || ||||||||||| ||| | ||||| Sbjct 108092 GAGAATGTGCACTCTGAGACCTATTCCCTTCTCATCGATACCTACATCAAGGA 108040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764182312160