Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tuber_20melanosporum_20[genbank_20GCA_5F000151645.1_202010-05-03] 398 sequences; 124,945,702 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq342 145 1e-29 >seq342 Length=727325 Score = 145 bits (160), Expect = 1e-29 Identities = 356/532 (67%), Gaps = 6/532 (1%) Strand=Plus/Plus Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 ||||| | ||||| || |||| ||| || || | | || || | ||||| |||||| Sbjct 61118 ATATCCGCGTGCCATGGCTCCATGTAGATAGCAAAGGCCCCGGGTCTCTTGTTGCCTCCC 61177 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 || || | || || ||||| | |||| | ||||| |||||||| | ||| ||||| || Sbjct 61178 TGGTCAACATACCTGGCGGTATGATTAAACACTCTTAACATTGGCACAATGCCGTTAGAA 61237 Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT-AGACC 63547 |||||||||| |||| |||||| ||| | |||||||| | | | || | || || Sbjct 61238 CTACCATTGGTCCCGGCAATATAGGAACCAGTAGCACGAATGC-AGTGAATGTTGAGTCC 61296 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TGTCATAGATGCCTT 63606 || || || || |||| || || | || || || |||| | | || || || || | Sbjct 61297 AATACCGCCAGCAGTTTTTGAAATCATAGCACAG-GTCTTAAGGGTATCGTAAATACCAT 61355 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA-GTAGTT 63665 | || || | |||| ||| | |||||| || | ||| | ||| | || Sbjct 61356 CAATCGAGTCCCCTTTCATAGTAACCAAGAAACAGGACGAGAGTTGAGG-CGATGGTGTG 61414 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || ||||| || | ||||| ||||| || ||||| | ||| ||| || || || Sbjct 61415 CCTGCATTGAAGAGAGTAGGCGAAGCATGGGTAAAATACTTTGAAGACGTGAGGTTATAT 61474 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 ||||| ||| | ||| | |||| | ||||||||| || || |||||||| | ||| Sbjct 61475 GTCTCGATAACCTTGTCGACATCCTCTCCATGAATTCCGACAGCCACACGCATAAGCATA 61534 Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845 |||||||| | ||| ||| ||| || || | | ||| || ||||||||| Sbjct 61535 TGCTGAGGACGCTCAGCAACTTTTCCATTGATGCGAAGAAGGTACGAACGCTCCAAAGTT 61594 Query 63846 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAAT 63897 || || ||||| || ||||| ||| || ||||| ||||| | |||| Sbjct 61595 TTGAAGCCAAAGTAATTGTAGTTAAAATCCTTATCGTAGATAATGGCAGAAT 61646 Score = 86.0 bits (94), Expect = 8e-12 Identities = 233/352 (66%), Gaps = 10/352 (3%) Strand=Plus/Plus Query 62772 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC--AGCTTCTG 62829 || ||||||||||||| ||| | ||||||||| ||| | || | |||| ||| || | Sbjct 60458 AAACCTTGAACACCAACACCAACAGGTCTATGCCTCGTGTT--ACTTTTCCTAGCCTCAG 60515 Query 62830 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCA 62889 | | ||||| | || | ||| || || || ||||| ||| ||| | || ||| || Sbjct 60516 GGACGGGATAGAAGTTGACATCGATGATCTTGTTGAGGTTTTTGATGACGACCTTGGTCA 60575 Query 62890 CATCCTTCAGTTTGAGAAAATC-AAATCGCCCATCT-ATTACAAACATGT----TCAATG 62943 | || | || ||| ||||| | |||||| ||| | | ||||| | ||| | Sbjct 60576 CCTCGTGCAACTTGGCGAAATCGTACTCGCCCCTCTGAACATCAACATATGTAGGCAAGG 60635 Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 63003 | | ||||||| |||||| || || ||||||| || | ||| | | ||||| | Sbjct 60636 CCAACGATGCCAAATTACAAACTGCGACCTCATCAGGTGCACTATACTCCACAATCTCGG 60695 Query 63004 TGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 63063 | || ||||| | | || ||||| || || || || || || |||||| | Sbjct 60696 TACAGAGATTGGACGATCTAATGGTTCCCAAGTTCTGCTGGTTGGATTTGCGGTTACATG 60755 Query 63064 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 | ||||| || || ||||| || | ||||| ||| | || | ||| | ||| Sbjct 60756 CGTCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCAGTTTGGGCTTCGAGAAT 60807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814466657440