Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tuber_20melanosporum_20[genbank_20GCA_5F000151645.1_202010-05-03] 398 sequences; 124,945,702 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq282 140 2e-28 seq218 140 2e-28 seq383 120 2e-22 >seq282 Length=12744 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3372 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3313 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3312 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3278 Score = 134 bits (148), Expect = 9e-27 Identities = 88/96 (92%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTT-GGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 |||||||||||||| |||||||||||||||||||||||||||||| || ||||||| Sbjct 11181 AAGCCCGTTCCCTTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCG 11122 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||||||||||||||||||||||| Sbjct 11121 TTAATCCATTCATGCGCGTCACTAATTAGATGACGA 11086 >seq218 Length=60243 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 48628 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 48687 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 48688 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 48722 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 56366 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 56425 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 56426 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 56460 >seq383 Length=466833 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| || ||| | || | || || || ||||||||| ||||| |||||| Sbjct 193721 TACCACCTCGCAGACGAAGGACAAGGTGGAGGGTCGACTCCTTTTGGATATTATAATCAC 193662 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| |||| |||| || || ||||| || || ||||| ||||| || | || Sbjct 193661 TCAAGGTACGACCGTCCTCTAGCTGCTTACCGGCGAAGATAAGGCGCTGTTGGTCTGGGG 193602 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| || ||| ||| || |||||| || | || ||||| | || | Sbjct 193601 GGATGCCTTCCTTATCCTGAATCTTACCCTTCACGTTGTCGATCGTATCCGAAGACTCGA 193542 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | |||||||||||||| || | |||||| || || |||||||| Sbjct 193541 CCTCGAGAGTAATAGTTTTACCGGTAAGGGTTTTGACAAAAATCTGCAT 193493 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| || ||||| ||||||||| ||||| || || Sbjct 193949 TACCACCACGAAGACGGAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTATAGTCGC 193890 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| |||| | || || || || || || ||||| || || ||||||||||| | || Sbjct 193889 TCAAAGTACGTCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGGG 193830 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || ||| ||||| ||| || || | | |||||| | ||| | Sbjct 193829 GGATACCCTCCTTATCCTGGATTTTACCCTTGACGTTGTCAATAGTATCGGAAGATTCGA 193770 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| ||||| || || | |||||| || || |||||||| Sbjct 193769 CTTCCAAAGTAATGGTTTTTCCAGTAAGGGTTTTGACAAAAATCTGCAT 193721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945575296738