Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tuber_20melanosporum_20[genbank_20GCA_5F000151645.1_202010-05-03] 398 sequences; 124,945,702 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq383 113 4e-20 seq320 96.9 3e-15 seq340 87.8 2e-12 >seq383 Length=466833 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || |||| ||||||||||||| || || ||||||||| Sbjct 193947 CCACCACGAAGACGGAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTATAGTCGCTC 193888 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| | || ||||| | | |||| ||||| ||||| || || || Sbjct 193887 AAAGTACGTCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGGGGG 193828 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || || || |||||| || | | || | || |||| || || || Sbjct 193827 ATACCCTCCTTATCCTGGATTTTACCCTTGACGTTGTCAATAGTATCGGAAGATTCGACT 193768 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || ||||| |||||||||||||| Sbjct 193767 TCCAAAGTAATGGTTTTTCCAGTAAGGGTTTTGACAAAAATCTGCAT 193721 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||| | || | || | | | ||||||||||| || || || || ||| Sbjct 193719 CCACCTCGCAGACGAAGGACAAGGTGGAGGGTCGACTCCTTTTGGATATTATAATCACTC 193660 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| || || ||||||| |||| || ||||||||||| || || Sbjct 193659 AAGGTACGACCGTCCTCTAGCTGCTTACCGGCGAAGATAAGGCGCTGTTGGTCTGGGGGG 193600 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| || || ||| | || || | ||| || | || || | ||||| | Sbjct 193599 ATGCCTTCCTTATC-CTGAATCTTACCCTTCACGTTG-TCGATCGTATCCGAAGACTCGA 193542 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | |||||||| || || ||||| |||||||||||||| Sbjct 193541 CCTCGAGAGTAATAGTTTTACCGGTAAGGGTTTTGACAAAAATCTGCAT 193493 Score = 89.7 bits (98), Expect = 5e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||||| || | ||| | | | ||||| || || || || |||||| Sbjct 193199 CCGCCACGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTCTGGATATTATAGTCGGAG 193140 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| ||| || ||||| |||||||||| | || | |||||| ||||| ||||| Sbjct 193139 AGAGTGCGCCCATCTTCGAGCTGTTTACCGGCGAAAATCAAACGCTGCTGGTCTGGAGGA 193080 Query 138508 ATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || | || |||| || | |||||| | ||||| || Sbjct 193079 ATCCCTTCTTTGTCTTGGATCTTGCTCTTCACATTG-TCGATGGTGTCCGAGGACTCAAC 193021 Query 138567 CTC 138569 ||| Sbjct 193020 CTC 193018 >seq320 Length=806987 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| || || | | | ||||| || |||||||| || ||| Sbjct 609716 CCGCCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTATAATCGGAA 609775 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| | || ||||| | | |||| | ||||| ||||| ||||| Sbjct 609776 AGAGTACGACCATCCTCCAACTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCTGGAGGA 609835 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| | || | || | |||| | | ||||| | ||||||| Sbjct 609836 ATACCCTCCTTATCC-TGAATCTTCGACTTGACATTGT-CGATTGTGTCAGAAGACTCCA 609893 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || |||| |||||| || ||||| ||||| Sbjct 609894 CCTCGAGGGTGATAGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 609942 >seq340 Length=732193 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 52669 TGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGG 52728 ||||||||||| | || |||| |||| || || ||||| || || ||||| || Sbjct 107548 TGGGCATGAACTCTAAGCTCATGAAGCAGTATATTGAATTTGTTGCCGACCGTCTTCTGT 107489 Query 52729 TGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACA 52788 || ||||| | ||||||| | ||| || || || || || |||||| | | Sbjct 107488 TGTCTCTCGGTAACCCAAAGTTTTACAATGCCACTAACCCATTCGACTTTATGGAGTCTA 107429 Query 52789 TTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 |||| |||| ||||| |||||||| ||||||||||| ||||| || ||| || Sbjct 107428 TTTCTCTTGCCGGCAAAACCAACTTCTTCGAGAAGCGTGTCGGAGACTATCAG 107376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259931094560