Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tuber_20melanosporum_20[genbank_20GCA_5F000151645.1_202010-05-03] 398 sequences; 124,945,702 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq287 120 4e-21 seq394 96.9 4e-14 >seq287 Length=845177 Score = 120 bits (132), Expect = 4e-21 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 1573968 GAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATC 1574027 || || ||||| ||||||||||| |||||||||||||| ||||||| || || || | Sbjct 538349 GAAGCAGTGCTAGAACTCAACGCTTCGGACGAGCGCGGGATCGACGTGGTCCGGAATCGC 538290 Query 1574028 ATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATC 1574087 |||||| ||| |||| | || || || |||||| | || ||||| | || Sbjct 538289 ATCAAGGGATTCGCGCAGAAGAAGGTCACGCTCCCACCCGGAAGACAGAAGGTTGTGATT 538230 Query 1574088 CTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAA 1574147 ||||| || |||||| || | ||| ||| ||||||||||||||| || ||| |||||| Sbjct 538229 CTCGATGAAGCCGACAGCATGACGGCGGGGGCCCAGCAGGCCCTCCGCCGCACGATGGAA 538170 Query 1574148 AAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186 | || | ||| || ||||| || | || |||||| Sbjct 538169 ATATACTCATCCACCACCCGCTTCGCGTTTGCCTGCAAC 538131 >seq394 Length=416550 Score = 96.9 bits (106), Expect = 4e-14 Identities = 322/492 (65%), Gaps = 13/492 (3%) Strand=Plus/Plus Query 1852169 AATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCG 1852228 |||||||| | ||| || ||||||||||| ||||||||| | | ||||| ||||||| Sbjct 360438 AATATCTTTCTCTGATCCACGCCGCCAAACTGCGCGTCGACGCCCAAGTGCTCCTCGTCG 360497 Query 1852229 AGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGG-TTGCGGTCCATCTTGAC 1852287 || ||||||||||||||||| | || | ||| || | ||| |||| || |||||| Sbjct 360498 AGCGCCTGCATGAGCGGGTAAATCAGGCCGCTTAGCAAAGGGCTTGC-AACCTGCTTGAC 360556 Query 1852288 CACCTGAGCGGCGGCCT--TTTGCGCCGTGC-CGGTGCGCACGTGCGCCGCGAGTCGGTA 1852344 ||| | || | |||| || ||| ||||| |||| ||| | ||| ||| | Sbjct 360557 CACTTCCGCACCCGCCTTCTTCGCGTCGTGCTCGGT---AACGATAGAGCTGAGGCGGAA 360613 Query 1852345 GAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAACTCGAGTCC 1852404 | ||| | |||| ||| | || ||||||| || ||| |||| || || Sbjct 360614 CAAGTCCATAACGTACGCGGCCCCCTTCTGGTACGAGGACCCGAGCACGAAGCGTAGCTT 360673 Query 1852405 GCCCAGCGGCACGCCGATGTGCT-GGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGC 1852463 | | ||| || |||||| ||| | | | || ||| ||| | | ||||| | Sbjct 360674 CTCAATCGGGACCCCGATG-GCTCGCAAGACGGACTTTATGACTAGTTCGTAGTACTTTG 360732 Query 1852464 ACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGG 1852523 |||||| || || ||| || | || |||||| ||| ||||| | ||| | Sbjct 360733 CCCGGTGCGTCACTAGCTCCAGAGGGGCTTTTAGGTTGTCCAGGAATGCGTGGATGTCTG 360792 Query 1852524 CAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCA 1852583 | | || | |||| ||||| || | || |||| || || || | || || | Sbjct 360793 CTAGCAGAACTGTGACTTCGCAGCCTGCGCGCAGGAAGTGAGCGAGCTTCACCATCGGTA 360852 Query 1852584 CAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGATCAGGGGGC 1852643 | ||||| || |||||| ||| || ||||| || ||||| || || | ||||||| Sbjct 360853 CGAAGTACCCGCAGTGCGGACGGCCTGTTGGCGCAGTACCCCAGTAGATCTTTAGGGGGC 360912 Query 1852644 G---CTCGGCCA 1852652 | |||||||| Sbjct 360913 GGTTCTCGGCCA 360924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107106538256166