Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tuber_20melanosporum_20[genbank_20GCA_5F000151645.1_202010-05-03] 398 sequences; 124,945,702 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq320 134 1e-26 seq383 105 5e-18 seq98 89.7 4e-13 >seq320 Length=806987 Score = 134 bits (148), Expect = 1e-26 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| ||||| ||||| |||||||||||||| | || || ||| Sbjct 609727 ACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTATAATCGGAAAGAGTACGACC 609786 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || |||||| | ||||| | ||||| || || ||||||||||| || Sbjct 609787 ATCCTCCAACTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCTGGAGGAATACCCTCCTT 609846 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| || | |||||| | || | ||||||||| || || || || || | Sbjct 609847 ATCCTG-AATCTTCGACTTGACATTGTCGATTGTGTCAGAAGACTCCACCTCGAGGGTGA 609905 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| || || || || |||||||| || || |||||| Sbjct 609906 TAGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCATT 609943 Score = 120 bits (132), Expect = 2e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| ||||| ||||| |||||||||||||| | || ||| ||| Sbjct 610183 ACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTATAATCGGAAAGGGTACGACC 610242 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| ||||| || | ||||| | ||||| || || || || ||||| || Sbjct 610243 ATCCTCAAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCTGGGGGGATGCCCTCCTT 610302 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | ||| |||||| | || | ||| |||||| || || || || || || Sbjct 610303 ATCCTGGATCTTTGACTTGACATTGTCAATAGTATCAGAAGACTCCACCTCGAGGGTGAT 610362 Query 29751 AGTTTTGCCAGTTA 29764 || |||||||||| Sbjct 610363 TGTCTTGCCAGTTA 610376 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | |||||| || || || || |||||||| ||||| | | ||| || | Sbjct 609956 CGAAGGACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTACGGCCA 610015 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || ||||| | ||||||| |||||| || || ||||||||||| || Sbjct 610016 TCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGAATACCCTCCTTA 610075 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| ||||| | || | ||||| || || || || || || || Sbjct 610076 TCTTGGATTTTCGACTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATT 610135 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| |||||||| || ||||| || |||||| Sbjct 610136 GTCTTGCCGGTTAAGGTCTTGACAAAGATTTGCATT 610171 >seq383 Length=466833 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || || || || ||||| |||||||| || || | Sbjct 193491 CCACCTCGCAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAG 193432 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | ||| ||||| ||| |||||| | ||||||||| || ||| Sbjct 193431 AGGGTTCTGCCATCTTCCAATTGCTTGCCGGCAAATATCAGACGTTGCTGATCTGGAGGA 193372 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | ||| ||||||| | || | ||||| ||| || ||| Sbjct 193371 ATGCCCTCCTTGTCTTGAATTTTGCCTTTGACATTATCGATTGTGTCCGAAGACTCGACT 193312 Query 29740 TCAAGAGTTATAGTTTTGCCAGT 29762 |||||||| || || || || || Sbjct 193311 TCAAGAGTGATTGTCTTTCCGGT 193289 >seq98 Length=1126903 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| |||||||| || |||||| ||||||| || ||||||||||| || || ||||| || Sbjct 1023257 ATCTTCGAGTTGCTTCCCAGCAAATATCAACCTCTGCTGATCCGGAGGGATCCCCTCCTT 1023316 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||| |||||| | || | || || || ||||| || | || || Sbjct 1023317 ATCTTGGATTTTGCTCTTGACATTGTCAATTGTATCTGAGCTCTCTACCTCCAAGGTGAT 1023376 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || || || || ||||||||| Sbjct 1023377 GGTCTTCCCGGTCAAAGTCTTCACGAAAATCTGCATT 1023413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217331446118