Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tuber_20melanosporum_20[genbank_20GCA_5F000151645.1_202010-05-03] 398 sequences; 124,945,702 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq342 109 1e-18 seq383 107 5e-18 seq320 102 2e-16 >seq342 Length=727325 Score = 109 bits (120), Expect = 1e-18 Identities = 205/297 (69%), Gaps = 7/297 (2%) Strand=Plus/Plus Query 173072 TTCCCGTGTGCTTTTGGTTATTTTTGCGGC-ATATGGCGTCCTTGTAGACGATGAAGGGC 173130 ||||| || || ||||| ||||||| | ||| |||||||||||| ||||| || Sbjct 60720 TTCCCAAGTTCTGCTGGTTGGATTTGCGGTTACATG-CGTCCTTGTAGAGCATGAAAGGG 60778 Query 173131 ATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTA 173190 | ||| ||| | ||| || | | |||||| | ||| |||| ||| ||||| | ||| Sbjct 60779 TTGCCAGTCTCAGTTTGGGCTTCGAGAATGTGATACCAGAGTTTTTGCGCTTTGATGGTC 60838 Query 173191 GTTCTCGC----TCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCC 173246 | | || |||| | || | | ||| | | |||||| | ||||| || | || Sbjct 60839 TTGCGAGCAAGGTCTTTAGTATTCT-CATATTTGTTATAGAGAGCCTCGAATTCTTCACC 60897 Query 173247 GTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGT 173306 ||| ||| | | ||| || ||||| || ||||||||||| ||||| | ||| | Sbjct 60898 CCAAACGTCGGCCAAACCTGGGGCTTCATTAGGACAAAAGAGGCTCCACTCGGCATTTGC 60957 Query 173307 CTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAACAATTGCCTTGC 173363 ||| || ||||||||||| || || | |||||| ||||||||||| | ||||| Sbjct 60958 CTCAACTCTCTTCATGAATAGATCAGGGATCCAAAGAGCGTAGAACAAATCTCTTGC 61014 >seq383 Length=466833 Score = 107 bits (118), Expect = 5e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || ||||| || |||||| | ||||| || ||| |||||| |||| || |||| Sbjct 193289 ACCGGAAAGACAATCACTCTTGAAGTCGAGTCTTCGGACACAATCGATAATGTCAAAGGC 193348 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| |||||||| || || || ||| || || ||| | || || || ||||| || Sbjct 193349 AAA-ATTCAAGACAAGGAGGGCATTCCTCCAGATCAGCAACGTCTGATATTTGCCGGCAA 193407 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| ||||||||||| || || | |||| |||||| | |||||||||||||| || || Sbjct 193408 GCAATTGGAAGATGGCAGAACCCTCTCCGACTACAACATTCAGAAAGAGTCTACCCTCCA 193467 Query 206373 CCTTGT 206378 |||||| Sbjct 193468 CCTTGT 193473 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || |||||||| || ||||||||||| ||| ||| || Sbjct 193724 CAGATTTTTGTCAAAACCCTTACTGGAAAAACCATTACTTTGGAAGTCGAATCTTCCGAT 193783 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || || || || || || || || || ||| Sbjct 193784 ACTATTGACAACGTCAAGGGTAAAATCCAGGATAAGGAGGGTATCCCCCCAGATCAACAA 193843 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || ||||||||||| |||||| | |||||| ||| || || || Sbjct 193844 CGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGACGTACTTTGAGCGACTATAATATC 193903 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| ||||| ||| | ||| | | ||||| Sbjct 193904 CAAAAGGAGTCAACTCTACACTTGGTTCTCCGTCTTCG 193941 Score = 100 bits (110), Expect = 7e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||||||||| || || || ||||| |||| || ||| Sbjct 192997 ACCGGAAAGACCATCACTTTGGAGGTTGAGTCCTCGGACACCATCGACAATGTGAAGAGC 193056 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| |||||||| ||| || ||| || | | || |||||||| || Sbjct 193057 AAGATCCAAGACAAAGAAGGGATTCCTCCAGACCAGCAGCGTTTGATTTTCGCCGGTAAA 193116 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | |||||||| | ||| | |||| || || |||||||||||||||| ||||| Sbjct 193117 CAGCTCGAAGATGGGCGCACTCTCTCCGACTATAATATCCAGAAAGAGTCTACCCTTCAT 193176 Query 206374 CTTGT 206378 ||||| Sbjct 193177 CTTGT 193181 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || ||||| || ||| | || || || ||| || Sbjct 193496 CAGATTTTTGTCAAAACCCTTACCGGTAAAACTATTACTCTCGAGGTCGAGTCTTCGGAT 193555 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || ||||| || || ||| || Sbjct 193556 ACGATCGACAACGTGAAGGGTAAGATTCAGGATAAGGAAGGCATCCCCCCAGACCAACAG 193615 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| |||||| | || || || | || ||| ||||| || || Sbjct 193616 CGCCTTATCTTCGCCGGTAAGCAGCTAGAGGACGGTCGTACCTTGAGTGATTATAATATC 193675 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || ||||| || || |||||||| Sbjct 193676 CAAAAGGAGTCGACCCTCCACCTTGT 193701 >seq320 Length=806987 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||| || ||||| | || ||||| |||||||||| |||| Sbjct 609927 AAAACTTTGACCGGAAAGACTATCACCCTCGAGGTGGAGTCTTCTGACACAATCGACAAT 609868 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || ||| || ||| || | | ||||| Sbjct 609867 GTCAAGTCGAAGATTCAGGATAAGGAGGGTATTCCTCCAGACCAGCAGCGCTTGATCTTT 609808 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||| ||||| | ||| | ||||||| ||| | ||||||||||| Sbjct 609807 GCTGGTAAGCAGTTGGAGGATGGTCGTACTCTTTCCGATTATAACATTCAGAAAGAGTCC 609748 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | ||| | | ||||| Sbjct 609747 ACCCTTCACTTGGTTCTTCGTCTTCG 609722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181814773452558