Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tuber_20melanosporum_20[genbank_20GCA_5F000151645.1_202010-05-03] 398 sequences; 124,945,702 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq320 102 5e-17 seq98 95.1 8e-15 seq383 87.8 1e-12 seq287 84.2 1e-11 >seq320 Length=806987 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||||| || || ||| ||| || |||||||||||||| ||| Sbjct 609716 CCGCCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTATAATCGGAA 609775 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | || ||||| ||||| || || ||||| ||||| || || Sbjct 609776 AGAGTACGACCATCCTCCAACTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCTGGAGGA 609835 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || ||| || | || || | |||||||| |||||| Sbjct 609836 ATACCCTCCTTATC-CTGAATCTTCGACTTGACATTGTCGATTGTGTCAGAAGACTCCAC 609894 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| || ||||| || ||||| ||||| Sbjct 609895 CTCGAGGGTGATAGTCTTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 609942 Score = 102 bits (112), Expect = 5e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||||| || || ||| ||| || |||||||||||||| ||| Sbjct 610172 CCGCCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTATAATCGGAA 610231 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || |||||||| || ||||| || || || ||||| ||||| || || Sbjct 610232 AGGGTACGACCATCCTCAAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCTGGGGGG 610291 Query 34600 ACTCCCTCCTTGTCTGTGATCTTT 34623 | |||||||| || ||||||| Sbjct 610292 ATGCCCTCCTTATCCTGGATCTTT 610315 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | ||| || || ||||||||| ||||| |||||||| Sbjct 610455 CCGCCACGAAGACGGAGAACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAATCTGAG 610514 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| ||||| || || || ||||| || ||||| || || || || || Sbjct 610515 AGGGTGCGTCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 610574 Query 34600 ACTCCCTCCTTGTC 34613 | |||||||||||| Sbjct 610575 ATTCCCTCCTTGTC 610588 >seq98 Length=1126903 Score = 95.1 bits (104), Expect = 8e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| ||||| || || |||||||| || | ||| || ||||| || | |||||||| Sbjct 1023258 TCTTCGAGTTGCTTCCCAGCAAATATCAACCTCTGCTGATCCGGAGGGATCCCCTCCTTA 1023317 Query 34612 TCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 ||| ||| ||| | || || | |||||| ||| |||||| || |||| ||| || Sbjct 1023318 TCTTGGAT-TTTGCTCTTGACATTGTCAATTGTATCTGAGCTCTCTACCTCCAAGGTGAT 1023376 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| || || ||||| ||||||||||| Sbjct 1023377 GGTCTTCCCGGTCAAAGTCTTCACGAAAATCTGCAT 1023412 >seq383 Length=466833 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| || | ||| || || ||| || || || ||||| || || Sbjct 193199 CCGCCACGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTCTGGATATTATAGTCGGAG 193140 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || ||||||||||| || || |||||||| ||||| || || Sbjct 193139 AGAGTGCGCCCATCTTCGAGCTGTTTACCGGCGAAAATCAAACGCTGCTGGTCTGGAGGA 193080 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | || || |||||| |||||| Sbjct 193079 ATCCCTTCTTTGTCTTGGATCTT 193057 >seq287 Length=845177 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || | ||| || ||||||||||| || ||||| || || ||| Sbjct 368609 CCACCACGAAGGCGGAGGACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 368668 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| ||||| || || || || || || ||||||||||| || || || Sbjct 368669 AGGGTGCGACCGTCCTCAAGCTGCTTCCCAGCGAAGATCAAACGCTGTTGATCTGGGGGA 368728 Query 34600 ACTCCCTCCTTGTC 34613 | ||| ||||| || Sbjct 368729 ATTCCTTCCTTATC 368742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728073364734