Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 >seq1 Length=10671843 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 ||||| || |||||||| ||| ||| | |||||||| ||||||||||| ||||| Sbjct 3822941 ATATATGTGTCGATGAGAAGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGG 3822882 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| |||||||| || || | |||||||||||| | ||| || || |||| Sbjct 3822881 AAACCGTAGAAGCATCGTGCCTCAGGTATTTGAACTTCGCCACTGAAGCGCTCAACTAGG 3822822 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || ||||| ||||| || || || || ||||| || Sbjct 3822821 TTCTCGTTGACGATACCATCTGATGCAGCAAAAAAGGC 3822784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545554714760