Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 >seq1 Length=10671843 Score = 95.1 bits (104), Expect = 1e-14 Identities = 178/259 (69%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 || ||||| |||||||| || ||||| || || ||||||||||| ||||| | |||| Sbjct 3822911 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGTGCCTCAGGTATT 3822852 Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || ||||| | || || || | |||||||| || |||||||| || ||||||| Sbjct 3822851 TGAACTTCGCCACTGAAGCGCTCAACTAGGTTCTCGTTGACGATACCATCTGATGCAGCA 3822792 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG-----CC 16676 ||||| || | | ||| |||||| || |||||| | || || | || || Sbjct 3822791 AAAAAGGCGAGGACGTGGGAAATGAAGTAGCGTTCGTC-GTCGT-TGAGTCTGTTGTTCC 3822734 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 |||| | |||||||| || | || | ||||| | ||||| || || | |||| Sbjct 3822733 AATCGTGCAAATCTTTCGAGAGGTCGATCTCTTCCGCGGTCCAGAATGATGCTTCAGCCT 3822674 Query 16737 TTTTATACATTTTCCAAAT 16755 | || ||||| | ||| || Sbjct 3822673 TCTTGTACATCTGCCAGAT 3822655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414355251240