Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq1 95.1 1e-14
>seq1
Length=10671843
Score = 95.1 bits (104), Expect = 1e-14
Identities = 178/259 (69%), Gaps = 7/259 (3%)
Strand=Plus/Minus
Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561
|| ||||| |||||||| || ||||| || || ||||||||||| ||||| | ||||
Sbjct 3822911 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGTGCCTCAGGTATT 3822852
Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621
|| ||||| | || || || | |||||||| || |||||||| || |||||||
Sbjct 3822851 TGAACTTCGCCACTGAAGCGCTCAACTAGGTTCTCGTTGACGATACCATCTGATGCAGCA 3822792
Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG-----CC 16676
||||| || | | ||| |||||| || |||||| | || || | || ||
Sbjct 3822791 AAAAAGGCGAGGACGTGGGAAATGAAGTAGCGTTCGTC-GTCGT-TGAGTCTGTTGTTCC 3822734
Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736
|||| | |||||||| || | || | ||||| | ||||| || || | ||||
Sbjct 3822733 AATCGTGCAAATCTTTCGAGAGGTCGATCTCTTCCGCGGTCCAGAATGATGCTTCAGCCT 3822674
Query 16737 TTTTATACATTTTCCAAAT 16755
| || ||||| | ||| ||
Sbjct 3822673 TCTTGTACATCTGCCAGAT 3822655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511414355251240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |