Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 132 6e-26 seq1 84.2 3e-11 >seq3 Length=5817774 Score = 132 bits (146), Expect = 6e-26 Identities = 211/301 (70%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 52798 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 52856 |||| |||| ||||||||||| || |||||||||| | || || || |||||||| | Sbjct 3750299 CTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATCC 3750358 Query 52857 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916 | || || ||||| || |||| || ||| ||||| || || | ||| ||| Sbjct 3750359 CAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTGTCG 3750418 Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976 | ||| || |||||||||| ||||||| ||||||||||| || || | ||| |||| Sbjct 3750419 GGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCAG 3750478 Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 53036 |||| | | ||| || |||| ||| ||||||| || || || | ||| |||| Sbjct 3750479 CCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATAT 3750538 Query 53037 CTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGA 53093 || | || | || | |||||||||| || ||||| || | ||||| | ||||| | Sbjct 3750539 CTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAATACGGTTCTTCA 3750598 Query 53094 T 53094 | Sbjct 3750599 T 3750599 Score = 120 bits (132), Expect = 4e-22 Identities = 573/902 (64%), Gaps = 18/902 (2%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 ||||||||||| || | || | ||| || ||| ||||| || || | || || | Sbjct 3751517 TCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAAAACAGCGTC 3751576 Query 54011 CACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 || | || ||| |||| || || ||||| |||||||| || |||||||||||| Sbjct 3751577 CA---TTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGAGCTAAG 3751633 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 || || || | || | |||||| || || |||||| | || | |||| | Sbjct 3751634 AAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAGAACTCG 3751693 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | | ||| | ||||| || || | ||| | || | | || ||||| ||||| ||| Sbjct 3751694 AAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACCTGGCCGCTTGTTACCT 3751753 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || || || | ||||| ||||||||||| | || | | ||| || | || || ||| Sbjct 3751754 CCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTG 3751813 Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 54307 || | ||||| || |||| || || || |||| | ||| | | || Sbjct 3751814 GAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTACGTTCAGC 3751873 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || || || || ||| | || || || || || || || || ||||| || || ||| Sbjct 3751874 CCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACCC 3751933 Query 54368 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 54427 || || || || || |||||| | || ||||| | ||| || | | || Sbjct 3751934 TCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGGTA 3751993 Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 54487 || ||||| || | || || || ||||| || || | || | || | || || || Sbjct 3751994 CCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGACATGAGGTTATAG 3752053 Query 54488 GTCTCGATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACA 54545 ||||||| | || |||| ||| | ||| || || || |||||||||| || Sbjct 3752054 GTCTCGAGGACCTTCTCAATAT--CATCGCCCCAAATGCCAACAGCAACACGCATTATCA 3752111 Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 |||| |||||||| ||| ||| |||| || | || | || || || | | Sbjct 3752112 TGTGTTGAGGTCTCTCAGCGACCTTGCCATTAAGACGAAGTAGATAAGACCGCTCGAGGG 3752171 Query 54606 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTT 54665 | || |||||||| || | || |||||||| ||||| | || | ||||| | Sbjct 3752172 TCTTGAAACCAAAGTATTGATAGTTGAAGTCTCGATCGTAGACGATGGCAGAGTTAA--- 3752228 Query 54666 TATCCTTATATTTGT-TAACTAC-ATC-CATGGTAATACT-TGAAATAATCGGAGAATGT 54721 | ||| | ||| | | ||| || ||| | || || || || || | | Sbjct 3752229 -ACTCTTCTGCGTGTCTCATTACGGTCTCATACGTCTGCTGCGAGATCATAGGTGCCGGC 3752287 Query 54722 TTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttt 54781 ||| |||||||| |||| |||| | | |||| | ||| | ||| | || Sbjct 3752288 TTCTTGTTTTTAGGGTTGATGTAGTGGTAGAGATCCGAGACCACCGCTGAAAACTGCTTC 3752347 Query 54782 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 54841 || |||| |||||||| || ||||| ||||| | ||| || || ||||||||||| ||| Sbjct 3752348 TTCGTTTGCTTGTGTAGGTTGGATACAGCTATACGAGCTGCGAGGATGGCATAATCGGGA 3752407 Query 54842 TG 54843 || Sbjct 3752408 TG 3752409 >seq1 Length=10671843 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209 || ||||||||||| | | || | |||||| || || || || || ||||| || || Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187 Query 24210 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 24269 ||||| |||||||| || ||||| || || || || |||||| || || || || || Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127 Query 24270 GCAAAGGCAATAAG 24283 || ||||||| ||| Sbjct 3823126 GCGAAGGCAACAAG 3823113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721548049360