Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq3 132 6e-26
seq1 84.2 3e-11
>seq3
Length=5817774
Score = 132 bits (146), Expect = 6e-26
Identities = 211/301 (70%), Gaps = 4/301 (1%)
Strand=Plus/Plus
Query 52798 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 52856
|||| |||| ||||||||||| || |||||||||| | || || || |||||||| |
Sbjct 3750299 CTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATCC 3750358
Query 52857 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916
| || || ||||| || |||| || ||| ||||| || || | ||| |||
Sbjct 3750359 CAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTGTCG 3750418
Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976
| ||| || |||||||||| ||||||| ||||||||||| || || | ||| ||||
Sbjct 3750419 GGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCAG 3750478
Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 53036
|||| | | ||| || |||| ||| ||||||| || || || | ||| ||||
Sbjct 3750479 CCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATAT 3750538
Query 53037 CTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGA 53093
|| | || | || | |||||||||| || ||||| || | ||||| | ||||| |
Sbjct 3750539 CTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAATACGGTTCTTCA 3750598
Query 53094 T 53094
|
Sbjct 3750599 T 3750599
Score = 120 bits (132), Expect = 4e-22
Identities = 573/902 (64%), Gaps = 18/902 (2%)
Strand=Plus/Plus
Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010
||||||||||| || | || | ||| || ||| ||||| || || | || || |
Sbjct 3751517 TCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAAAACAGCGTC 3751576
Query 54011 CACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067
|| | || ||| |||| || || ||||| |||||||| || ||||||||||||
Sbjct 3751577 CA---TTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGAGCTAAG 3751633
Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127
|| || || | || | |||||| || || |||||| | || | |||| |
Sbjct 3751634 AAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAGAACTCG 3751693
Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187
| | ||| | ||||| || || | ||| | || | | || ||||| ||||| |||
Sbjct 3751694 AAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACCTGGCCGCTTGTTACCT 3751753
Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247
|| || || | ||||| ||||||||||| | || | | ||| || | || || |||
Sbjct 3751754 CCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTG 3751813
Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 54307
|| | ||||| || |||| || || || |||| | ||| | | ||
Sbjct 3751814 GAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTACGTTCAGC 3751873
Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367
|| || || || ||| | || || || || || || || || ||||| || || |||
Sbjct 3751874 CCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACCC 3751933
Query 54368 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 54427
|| || || || || |||||| | || ||||| | ||| || | | ||
Sbjct 3751934 TCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGGTA 3751993
Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 54487
|| ||||| || | || || || ||||| || || | || | || | || || ||
Sbjct 3751994 CCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGACATGAGGTTATAG 3752053
Query 54488 GTCTCGATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACA 54545
||||||| | || |||| ||| | ||| || || || |||||||||| ||
Sbjct 3752054 GTCTCGAGGACCTTCTCAATAT--CATCGCCCCAAATGCCAACAGCAACACGCATTATCA 3752111
Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605
|||| |||||||| ||| ||| |||| || | || | || || || | |
Sbjct 3752112 TGTGTTGAGGTCTCTCAGCGACCTTGCCATTAAGACGAAGTAGATAAGACCGCTCGAGGG 3752171
Query 54606 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTT 54665
| || |||||||| || | || |||||||| ||||| | || | ||||| |
Sbjct 3752172 TCTTGAAACCAAAGTATTGATAGTTGAAGTCTCGATCGTAGACGATGGCAGAGTTAA--- 3752228
Query 54666 TATCCTTATATTTGT-TAACTAC-ATC-CATGGTAATACT-TGAAATAATCGGAGAATGT 54721
| ||| | ||| | | ||| || ||| | || || || || || | |
Sbjct 3752229 -ACTCTTCTGCGTGTCTCATTACGGTCTCATACGTCTGCTGCGAGATCATAGGTGCCGGC 3752287
Query 54722 TTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttt 54781
||| |||||||| |||| |||| | | |||| | ||| | ||| | ||
Sbjct 3752288 TTCTTGTTTTTAGGGTTGATGTAGTGGTAGAGATCCGAGACCACCGCTGAAAACTGCTTC 3752347
Query 54782 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 54841
|| |||| |||||||| || ||||| ||||| | ||| || || ||||||||||| |||
Sbjct 3752348 TTCGTTTGCTTGTGTAGGTTGGATACAGCTATACGAGCTGCGAGGATGGCATAATCGGGA 3752407
Query 54842 TG 54843
||
Sbjct 3752408 TG 3752409
>seq1
Length=10671843
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209
|| ||||||||||| | | || | |||||| || || || || || ||||| || ||
Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187
Query 24210 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 24269
||||| |||||||| || ||||| || || || || |||||| || || || || ||
Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127
Query 24270 GCAAAGGCAATAAG 24283
|| ||||||| |||
Sbjct 3823126 GCGAAGGCAACAAG 3823113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721548049360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |