Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq4 116 4e-21 >seq4 Length=4557415 Score = 116 bits (128), Expect = 4e-21 Identities = 173/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 145920 GTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTC-TCGGGGTTCCTCTTGATCT 145978 ||||||||||||||| ||| |||||| || |||| | || | || || |||||| || Sbjct 3811894 GTCCGCCGGGTTCCAAGCGCTGAGGATGATTCTCC-GATCGTACGGCTTGTTCTTGAGCT 3811836 Query 145979 CCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCA 146038 | || | ||| ||||| || || || ||||| ||||| ||||| | |||| Sbjct 3811835 TTTCAATAACCTCCGCCAGCTGATCGACCCCTTGCCCAGTATAATCAGTCTTCGCATCCA 3811776 Query 146039 CGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCT 146098 | ||| | || ||||| |||| ||| || || |||||||| || || ||||| ||| | Sbjct 3811775 CATACTCTGCGCCGAAATGCCGCCATTGAAAACCGTAGACAGGACCTAGGTCGCCGACGT 3811716 Query 146099 CCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCT 146158 | | || || ||| | | | ||||||| || || || || ||| |||||||||||| Sbjct 3811715 CTCGATGGGAAAGGCCGACGCTGTCGAGGAACTCACGCGAGCCATTGCCGTCCCAGATCT 3811656 Query 146159 TGA 146161 ||| Sbjct 3811655 TGA 3811653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076748368280