Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq4 116 4e-21
>seq4
Length=4557415
Score = 116 bits (128), Expect = 4e-21
Identities = 173/243 (71%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 145920 GTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTC-TCGGGGTTCCTCTTGATCT 145978
||||||||||||||| ||| |||||| || |||| | || | || || |||||| ||
Sbjct 3811894 GTCCGCCGGGTTCCAAGCGCTGAGGATGATTCTCC-GATCGTACGGCTTGTTCTTGAGCT 3811836
Query 145979 CCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCA 146038
| || | ||| ||||| || || || ||||| ||||| ||||| | ||||
Sbjct 3811835 TTTCAATAACCTCCGCCAGCTGATCGACCCCTTGCCCAGTATAATCAGTCTTCGCATCCA 3811776
Query 146039 CGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCT 146098
| ||| | || ||||| |||| ||| || || |||||||| || || ||||| ||| |
Sbjct 3811775 CATACTCTGCGCCGAAATGCCGCCATTGAAAACCGTAGACAGGACCTAGGTCGCCGACGT 3811716
Query 146099 CCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCT 146158
| | || || ||| | | | ||||||| || || || || ||| ||||||||||||
Sbjct 3811715 CTCGATGGGAAAGGCCGACGCTGTCGAGGAACTCACGCGAGCCATTGCCGTCCCAGATCT 3811656
Query 146159 TGA 146161
|||
Sbjct 3811655 TGA 3811653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590076748368280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |