Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 >seq2 Length=7009248 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| ||||||| ||||| ||| |||||| || ||||| || |||| | Sbjct 3059858 CCGCCACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 3059799 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | ||||||||||| || || ||| |||| | | |||||||||| || Sbjct 3059798 AACGTTCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGG 3059739 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| |||||| || || | | | | || || ||| | Sbjct 3059738 ATACCCTCTTTGTCCTGGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACT 3059679 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || ||||| ||||| | ||| |||||||| || ||||| Sbjct 3059678 TCCAAGGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | |||||||||||| |||||||| ||||||| || || || |||| Sbjct 3058876 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGATAGAGTACGGCCGTCT 3058817 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | || | | |||||| ||| ||| | |||||||||||| Sbjct 3058816 TCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCC 3058757 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | ||| || || | |||| || | ||| |||||| Sbjct 3058756 TGAATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTC 3058697 Query 21144 TTGCCGGT 21151 |||||||| Sbjct 3058696 TTGCCGGT 3058689 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 |||||| |||||||||||||| ||||| | ||| || | | ||||| ||||| ||||| Sbjct 3059145 AGTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCCTCAAGCTGCTTGCC 3059086 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 ||| | || | | |||||| || || | ||| |||||||| |||||| || Sbjct 3059085 GGCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTT 3059026 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | ||| ||||| || ||| |||| ||| |||||||| || || | ||| Sbjct 3059025 GACATTGTCGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTCTTTCCAGTGAGCGT 3058966 Query 21158 TTTGACAA 21165 || |||| Sbjct 3058965 CTTCACAA 3058958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259163976012