Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 132 5e-26 seq2 102 8e-17 seq6 95.1 1e-14 >seq1 Length=10671843 Score = 132 bits (146), Expect = 5e-26 Identities = 200/284 (70%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| || || || |||||||||| || ||| | ||||| Sbjct 3822655 ATCTGGCAGATGTACAAGAAGGCTGAAGCATCATTCTGGACCGCGGAAGAGATCGACCTC 3822714 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 || || || | ||| ||| | | | |||||| |||| ||| | ||||| Sbjct 3822715 TCGAAAGATTTGCACGATTGGAACAACAGACTCAACGACGACGAACGCTACTTCATTTCC 3822774 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || |||||||| || || || || |||||||||||||| || || ||||| Sbjct 3822775 CACGTCCTCGCCTTTTTTGCTGCATCAGATGGTATCGTCAACGAGAACCTAGTTGAGCGC 3822834 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || || | | ||||| || ||||||||||| || |||||| ||| Sbjct 3822835 TTCAGTGGCGAAGTTCAAATACCTGAGGCACGATGCTTCTACGGTTTCCAGATCATGATG 3822894 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 |||||| | ||||| || | || || ||||||||||| || Sbjct 3822895 GAGAACATCCACTCCGAGACTTACTCCCTTCTCATCGACACATA 3822938 Score = 120 bits (132), Expect = 3e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || |||||||| || ||||||||| |||| |||||| | | ||||| | Sbjct 8978419 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACAATC 8978360 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | |||| ||||| | ||||| || |||||||| |||||||||| ||| | Sbjct 8978359 GACAATGTCAAATCCAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGATTG 8978300 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| |||||||| ||| |||| || | || || || ||||||||||||||||||| Sbjct 8978299 ATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGTACACTTTCCGACTACAACATCCAGAAG 8978240 Query 40879 GAGG 40882 | || Sbjct 8978239 GTGG 8978236 Score = 118 bits (130), Expect = 1e-21 Identities = 266/388 (69%), Gaps = 14/388 (4%) Strand=Plus/Plus Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097 ||||| || |||||||| || || ||||| |||||||| || |||||| |||| Sbjct 3823110 CGCCTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTTTCGCTTCCATC 3823169 Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157 || ||||| ||||| ||||| || ||||| || ||||| ||| ||||| || ||||| Sbjct 3823170 TTCTGGCTTAAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTCAAACGAACTTATCTCT 3823229 Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGA 117217 | ||||||||||| ||| ||||| ||||| | || ||| ||| | | ||| Sbjct 3823230 CGCGACGAGGGTCTTCATACTGACTTCGCCTGCCTCCTCTTCTCTCATCTCAACAACCGA 3823289 Query 117218 CCGAGC--GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275 || ||| || | || ||| || || | || || || ||| |||||||||| | Sbjct 3823290 CCAAGCAAGCAG-GCTGTTCA-AGATGTCATTACTGAGGCCGTCACCATCGAGCAAGAGT 3823347 Query 117276 TCCTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCA 117333 || | || || || || || |||| |||| | || | || ||| | |||| ||| Sbjct 3823348 TCTTGACAGAGGCTCTACC-TTGCGCTCTGTTAGGTATGAA-CGCGGGTCTGATGAAGCA 3823405 Query 117334 ATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGG---CGCCAAGCACTA 117390 ||||||||| ||||| || || | || || || |||| |||| | ||| |||| Sbjct 3823406 ATACATCGAATTCGTGGCAGATCGTCTACTCCT--AGCT-CTCGGTAACCAGAAGTACTA 3823462 Query 117391 CAACACGCCCAACCCGCTGGACTTTATG 117418 |||| || | || || | ||||| ||| Sbjct 3823463 CAACGCGACAAATCCATTCGACTTCATG 3823490 >seq2 Length=7009248 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||| ||||| || || || || || || | || |||||| | | Sbjct 3059403 AATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATC 3059462 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| ||||| || || | ||||||||||| ||||| | |||| Sbjct 3059463 AGACACAATCGACAACG-TCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACC 3059521 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || ||| | |||| ||| ||||| ||| |||| |||| || || || | || |||| Sbjct 3059522 AACAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACA 3059581 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| || ||| ||| |||| Sbjct 3059582 ACATCCAAAAAGAGAGCACATTGCA 3059606 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||||||| | || || || | | |||| | | | | ||||| Sbjct 3058687 TCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCGGACACCATCGATAATGTCAAGT 3058746 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || |||| ||||| || ||||| ||| |||| ||||| || | |||| ||| |||| Sbjct 3058747 CCAAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCTGGCA 3058806 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || |||| || || || ||||||||||| ||||||||| |||| || | Sbjct 3058807 AGCAGCTCGAAGACGGCCGTACTCTATCGGACTACAACATTCAGAAGGAGTCCACTCTTC 3058866 Query 40892 A 40892 | Sbjct 3058867 A 3058867 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || || || || |||||| | || || || || Sbjct 3059632 ATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGAGTTCC 3059691 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | ||| || || | ||||||||||| ||||| ||||||| Sbjct 3059692 GACACGATTGACAACGTT-AAGAGCAAGATCCAGGACAAAGAGGGTATCCCGCCGGACCA 3059750 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | || || || |||||||| || | || || | || ||||| Sbjct 3059751 GCAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATTACAA 3059810 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| ||| |||||| | ||| Sbjct 3059811 CATCCAGAAGGAGAGCACCCTGCATTTGGTG 3059841 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAA 40761 || || |||||||| || || ||||||||| | || || ||| || | || | | | | Sbjct 3058960 GTGAAGACGCTCACTGGAAAGACCATCACCTTGGAGGTGGAATCCTCGGATACCATCGAC 3059019 Query 40762 ACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATC 40821 | |||||| || || | ||||| |||||||| || | || ||||| || | ||| Sbjct 3059020 AATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGCGCTTGATC 3059079 Query 40822 TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAG 40881 | || ||||| ||||| || || | || || || ||||||||||| || ||||| Sbjct 3059080 TTTGCCGGCAAGCAGCTTGAGGATGGACGTACTCTGTCTGACTACAACATTCAAAAGGAA 3059139 Query 40882 GCCACGCTGCATCTAGT 40898 |||| || || || || Sbjct 3059140 TCCACTCTTCACCTCGT 3059156 >seq6 Length=2243500 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || || ||||| | ||||| || || || |||| ||| ||||| || || || Sbjct 1182240 GACAAGGAAGGTATCCCACCCGACCAACAGCGCCTGATCTTCGCTGGCAAGCAACTCGAA 1182181 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||||||| |||||||||||||||||| ||| |||| || || || ||| || Sbjct 1182180 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTGGTGCTG 1182121 Query 40903 CG 40904 || Sbjct 1182120 CG 1182119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219154918320