Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1 132 5e-26
seq2 102 8e-17
seq6 95.1 1e-14
>seq1
Length=10671843
Score = 132 bits (146), Expect = 5e-26
Identities = 200/284 (70%), Gaps = 3/284 (1%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| || || || |||||||||| || ||| | |||||
Sbjct 3822655 ATCTGGCAGATGTACAAGAAGGCTGAAGCATCATTCTGGACCGCGGAAGAGATCGACCTC 3822714
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
|| || || | ||| ||| | | | |||||| |||| ||| | |||||
Sbjct 3822715 TCGAAAGATTTGCACGATTGGAACAACAGACTCAACGACGACGAACGCTACTTCATTTCC 3822774
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || |||||||| || || || || |||||||||||||| || || |||||
Sbjct 3822775 CACGTCCTCGCCTTTTTTGCTGCATCAGATGGTATCGTCAACGAGAACCTAGTTGAGCGC 3822834
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | || || || | | ||||| || ||||||||||| || |||||| |||
Sbjct 3822835 TTCAGTGGCGAAGTTCAAATACCTGAGGCACGATGCTTCTACGGTTTCCAGATCATGATG 3822894
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916
|||||| | ||||| || | || || ||||||||||| ||
Sbjct 3822895 GAGAACATCCACTCCGAGACTTACTCCCTTCTCATCGACACATA 3822938
Score = 120 bits (132), Expect = 3e-22
Identities = 137/184 (74%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || |||||||| || ||||||||| |||| |||||| | | ||||| |
Sbjct 8978419 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACAATC 8978360
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | |||| ||||| | ||||| || |||||||| |||||||||| ||| |
Sbjct 8978359 GACAATGTCAAATCCAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGATTG 8978300
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| |||||||| ||| |||| || | || || || |||||||||||||||||||
Sbjct 8978299 ATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGTACACTTTCCGACTACAACATCCAGAAG 8978240
Query 40879 GAGG 40882
| ||
Sbjct 8978239 GTGG 8978236
Score = 118 bits (130), Expect = 1e-21
Identities = 266/388 (69%), Gaps = 14/388 (4%)
Strand=Plus/Plus
Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097
||||| || |||||||| || || ||||| |||||||| || |||||| ||||
Sbjct 3823110 CGCCTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTTTCGCTTCCATC 3823169
Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157
|| ||||| ||||| ||||| || ||||| || ||||| ||| ||||| || |||||
Sbjct 3823170 TTCTGGCTTAAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTCAAACGAACTTATCTCT 3823229
Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGA 117217
| ||||||||||| ||| ||||| ||||| | || ||| ||| | | |||
Sbjct 3823230 CGCGACGAGGGTCTTCATACTGACTTCGCCTGCCTCCTCTTCTCTCATCTCAACAACCGA 3823289
Query 117218 CCGAGC--GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275
|| ||| || | || ||| || || | || || || ||| |||||||||| |
Sbjct 3823290 CCAAGCAAGCAG-GCTGTTCA-AGATGTCATTACTGAGGCCGTCACCATCGAGCAAGAGT 3823347
Query 117276 TCCTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCA 117333
|| | || || || || || |||| |||| | || | || ||| | |||| |||
Sbjct 3823348 TCTTGACAGAGGCTCTACC-TTGCGCTCTGTTAGGTATGAA-CGCGGGTCTGATGAAGCA 3823405
Query 117334 ATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGG---CGCCAAGCACTA 117390
||||||||| ||||| || || | || || || |||| |||| | ||| ||||
Sbjct 3823406 ATACATCGAATTCGTGGCAGATCGTCTACTCCT--AGCT-CTCGGTAACCAGAAGTACTA 3823462
Query 117391 CAACACGCCCAACCCGCTGGACTTTATG 117418
|||| || | || || | ||||| |||
Sbjct 3823463 CAACGCGACAAATCCATTCGACTTCATG 3823490
>seq2
Length=7009248
Score = 102 bits (112), Expect = 8e-17
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || |||||||| ||||| || || || || || || | || |||||| | |
Sbjct 3059403 AATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATC 3059462
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | | |||| ||||| || || | ||||||||||| ||||| | ||||
Sbjct 3059463 AGACACAATCGACAACG-TCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACC 3059521
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
| || ||| | |||| ||| ||||| ||| |||| |||| || || || | || ||||
Sbjct 3059522 AACAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACA 3059581
Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892
||||||| || ||| ||| ||||
Sbjct 3059582 ACATCCAAAAAGAGAGCACATTGCA 3059606
Score = 96.9 bits (106), Expect = 4e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771
|||| ||||| ||||||||| | || || || | | |||| | | | | |||||
Sbjct 3058687 TCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCGGACACCATCGATAATGTCAAGT 3058746
Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831
|| |||| ||||| || ||||| ||| |||| ||||| || | |||| ||| ||||
Sbjct 3058747 CCAAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCTGGCA 3058806
Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891
| ||||| || |||| || || || ||||||||||| ||||||||| |||| || |
Sbjct 3058807 AGCAGCTCGAAGACGGCCGTACTCTATCGGACTACAACATTCAGAAGGAGTCCACTCTTC 3058866
Query 40892 A 40892
|
Sbjct 3058867 A 3058867
Score = 89.7 bits (98), Expect = 5e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || ||||| || || || || |||||| | || || || ||
Sbjct 3059632 ATGCAGATCTTTGTCAAGACGCTTACCGGAAAGACGATCACCTTGGAAGTTGAGAGTTCC 3059691
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || |||| | ||| || || | ||||||||||| ||||| |||||||
Sbjct 3059692 GACACGATTGACAACGTT-AAGAGCAAGATCCAGGACAAAGAGGGTATCCCGCCGGACCA 3059750
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | || | || || || |||||||| || | || || | || |||||
Sbjct 3059751 GCAGCGTTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACGTTGTCGGATTACAA 3059810
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||||||||||| ||| |||||| | |||
Sbjct 3059811 CATCCAGAAGGAGAGCACCCTGCATTTGGTG 3059841
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAA 40761
|| || |||||||| || || ||||||||| | || || ||| || | || | | | |
Sbjct 3058960 GTGAAGACGCTCACTGGAAAGACCATCACCTTGGAGGTGGAATCCTCGGATACCATCGAC 3059019
Query 40762 ACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATC 40821
| |||||| || || | ||||| |||||||| || | || ||||| || | |||
Sbjct 3059020 AATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGCGCTTGATC 3059079
Query 40822 TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAG 40881
| || ||||| ||||| || || | || || || ||||||||||| || |||||
Sbjct 3059080 TTTGCCGGCAAGCAGCTTGAGGATGGACGTACTCTGTCTGACTACAACATTCAAAAGGAA 3059139
Query 40882 GCCACGCTGCATCTAGT 40898
|||| || || || ||
Sbjct 3059140 TCCACTCTTCACCTCGT 3059156
>seq6
Length=2243500
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| || || ||||| | ||||| || || || |||| ||| ||||| || || ||
Sbjct 1182240 GACAAGGAAGGTATCCCACCCGACCAACAGCGCCTGATCTTCGCTGGCAAGCAACTCGAA 1182181
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | ||||||||| |||||||||||||||||| ||| |||| || || || ||| ||
Sbjct 1182180 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTGGTGCTG 1182121
Query 40903 CG 40904
||
Sbjct 1182120 CG 1182119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219154918320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |