Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 seq1 98.7 1e-15 >seq2 Length=7009248 Score = 122 bits (134), Expect = 1e-22 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||||||||||||| ||||| || ||||||||| ||| ||||| |||| || Sbjct 3059612 ACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCC 3059553 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||| || ||||| || | |||||| ||||| | || | | ||| ||||| | Sbjct 3059552 AACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGG 3059493 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || || |||| ||| | | | ||||| ||||| || || | ||| || || || Sbjct 3059492 ATCTTCGACTTGA-CGTTGTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCTT 3059434 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || ||||||||||| ||||| |||||| Sbjct 3059433 CCCAGTAAGCGTCTTTACGAAGATCTGCATT 3059403 Score = 109 bits (120), Expect = 6e-19 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||||||||| ||||||||||| || || |||||||| | || || || | || || Sbjct 3059841 CACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGGCCATCCTC 3059782 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || || | ||||||||||| | ||| | | ||| |||||| | Sbjct 3059781 CAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGTCC-T 3059723 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGG 43149 | | || | | | ||| | | | ||||||| ||| || || || | ||||| | Sbjct 3059722 GGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTC---TCAACTTCCAAGGTGATCG 3059666 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || |||||||| |||||||| ||||| Sbjct 3059665 TCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| |||| |||||| || | || || |||||||| || || || Sbjct 3059138 TCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCCTCAAGCTGCTTGCCGGCAAAG 3059079 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||| || | || | || |||||||||| ||| || |||| | Sbjct 3059078 ATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTG 3059019 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || || |||||||| || | |||||||| || || || |||||||| ||| Sbjct 3059018 TCGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTCTTTCCAGTGAGCGTCTTCACA 3058959 Query 43173 A 43173 | Sbjct 3058958 A 3058958 >seq1 Length=10671843 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || | || || | |||||| || || || | Sbjct 8978239 CCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGA 8978298 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||| | || | || ||||||||| |||||| ||||| | Sbjct 8978299 TCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGT 8978358 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||||||||||| || |||| |||||||| || ||||| || ||||| || | Sbjct 8978359 CGATTGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGA 8978418 Query 43174 AG 43175 || Sbjct 8978419 AG 8978420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817549965960