Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq2 118 8e-22
seq6 84.2 2e-11
>seq2
Length=7009248
Score = 118 bits (130), Expect = 8e-22
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGT 45185
||||| ||||| |||||||||||||| |||||||| || || ||| || | || |
Sbjct 3059840 ACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTT--CGGCCATCCT 3059783
Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245
|||| || || || || || ||||| ||||| ||||| || || | |||||| ||||||
Sbjct 3059782 CCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGTCCT 3059723
Query 45246 CAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
|| || ||||| || | || | |||| || ||| || |||| ||| ||||||
Sbjct 3059722 GGATCTTGCTCTTAA-CGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGTGATCGTC 3059664
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || || ||||| |||||||| |||||
Sbjct 3059663 TTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Score = 96.9 bits (106), Expect = 3e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||||| |||||||| || || |||||||| || ||||| || |||| |||
Sbjct 3059612 ACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCC 3059553
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243
| || || |||||||| ||||| ||||||||||| || || | |||||| |||||
Sbjct 3059552 AACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTC 3059497
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| ||||||||||||||||||||| || || |||| ||
Sbjct 3058873 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGATAGAGTACGGCCGTCTTCG 3058814
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| ||||| ||||| || || || || | || ||||||||| |
Sbjct 3058813 AGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 3058754
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | ||||| | ||||||||| | ||| || ||||||
Sbjct 3058753 ATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTG 3058694
Query 45308 CCCGT 45312
|| ||
Sbjct 3058693 CCGGT 3058689
>seq6
Length=2243500
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| ||| ||||| |||||||||||| || ||| | || ||
Sbjct 1182125 ACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCG 1182184
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243
||||| || || ||||| |||| |||||||||||||| || | ||| ||||||||
Sbjct 1182185 AGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGGGATACCTTCCTTGTC 1182240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075166295147
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |