Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 2e-11 >seq1 Length=10671843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || || || ||| |||||| ||||| || | | |||||||||||||| || || | Sbjct 3823261 CAGGCGAAGTCAGTATGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGA 3823202 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||| | || || || || | ||| || || | |||||| || ||| |||||| Sbjct 3823201 CCCGGCATAAGACCGCGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAG 3823142 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 || |||||||| ||||| || || | | |||| |||| | | || || | Sbjct 3823141 ATACCCTCAACAGCAGCGAAGGCAACAAGGCGTTGAGCAAAGGTAGAGTTCTTATCTTGG 3823082 Query 14384 ATCCATTTTCTAGCCCATTCAGATTTTTT 14412 |||||||| ||||||| || | ||| || Sbjct 3823081 ATCCATTTGATAGCCCAGTCGGCTTTCTT 3823053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345557794760