Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq3 246 3e-60
seq1 96.9 3e-15
seq2 93.3 4e-14
>seq3
Length=5817774
Score = 246 bits (272), Expect = 3e-60
Identities = 490/721 (68%), Gaps = 10/721 (1%)
Strand=Plus/Plus
Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323
|| ||||| ||| ||||||| ||| |||||||| || | || | || || | ||
Sbjct 3751514 GCCTCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAAAACAGC 3751573
Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383
|||| | | || || || || |||| || ||||| || |||| ||||| ||
Sbjct 3751574 GTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGAGCTAAG 3751633
Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443
|| || || |||||||| || ||||| |||||| ||||| ||| ||||| || ||
Sbjct 3751634 AAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAGAACTCG 3751693
Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503
|| || || || ||||| ||||| ||||| ||||| ||||| || || | ||| || ||
Sbjct 3751694 AAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACCTGGCCGCTTGTTACCT 3751753
Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563
|| || ||||| || | || ||||| ||| | || | ||||| ||||||| ||||||
Sbjct 3751754 CCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTG 3751813
Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTC-GA-ACGTTGTGAACGTGGA 23621
|| | || | ||| || | || || | |||| || ||| ||| |||| |
Sbjct 3751814 GAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGT--ACGTTCA 3751871
Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681
|| |||||||| ||| ||||| |||| || || |||| || ||||| || |
Sbjct 3751872 GCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATAC 3751931
Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741
|||| |||||||||||||| | ||| | |||||| || | ||| |||| || || |
Sbjct 3751932 CCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGG 3751991
Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801
|| | || ||| || || || |||||| || ||||| | ||||| || || |
Sbjct 3751992 TACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGACATGAGGTTAT 3752051
Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861
| || |||| | | ||||| || || || || || | || || ||||| ||||
Sbjct 3752052 AGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACACGCATTATCA 3752111
Query 23862 TGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918
||| ||||||||||| ||||| | ||| |||| | ||||| || || | |
Sbjct 3752112 TGTGTTGAGGTCTCTCAGCGACCTT---GCCATTAAGACGAAGTAGATAAGACCGCTCGA 3752168
Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978
|| || || ||||| || | |||||| ||||| ||||||| || ||||| || || |
Sbjct 3752169 GGGTCTTGAAACCAAAGTATTGATAGTTGAAGTCTCGATCGTAGACGATGGCAGAGTTAA 3752228
Query 23979 A 23979
|
Sbjct 3752229 A 3752229
>seq1
Length=10671843
Score = 96.9 bits (106), Expect = 3e-15
Identities = 275/418 (66%), Gaps = 10/418 (2%)
Strand=Plus/Plus
Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040
|| ||||| || || || ||||| |||||| || || || | || || ||| |
Sbjct 3823119 GCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTTTCGCTTCCATCTTCTGGCTT 3823178
Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100
||||| ||||| || ||||| || ||||| || ||||| | || || |||||||||
Sbjct 3823179 AAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTCAAACGAACTTATCTCTCGCGACGAG 3823238
Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGAC---G 58157
||||| |||||||| || || ||||| | | |||||| | |||| ||||||| |
Sbjct 3823239 GGTCTTCATACTGACTTCGCCTGCCTCCTCTTCTCTCA---TCTCAA-CAACCGACCAAG 3823294
Query 58158 CGGGATCGCATCTT--GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215
| | || | || || | || || ||||| ||| | ||||| | ||||| | |
Sbjct 3823295 CAAGCAGGC-TGTTCAAGATGTCATTACTGAGGCCGTCACCATCGAGCAAGAGTTCTTGA 3823353
Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275
| || || ||||| || || | ||||||||| | | ||||| | ||||| |
Sbjct 3823354 CAGAGGCTCTACCTTGCGCTCTGTTAGGTATGAACGCGGGTCTGATGAAGCAATACATCG 3823413
Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAA 58335
| || || || || | || | || | || | || | |||||| ||| ||
Sbjct 3823414 AATTCGTGGCAGATCGTCTACTCCTAGCTCTCGGTAACCAGAAGTACTACAACGCGACAA 3823473
Query 58336 ATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393
|||| || || || ||| | ||| || | | |||||||| ||||| ||||| ||
Sbjct 3823474 ATCCATTCGACTTCATGGAGTCGATATCATTGGCCGGCAAGACCAACTTCTTCGAGAA 3823531
Score = 93.3 bits (102), Expect = 4e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261
||||| ||||| || || || || || |||||| |||| || ||| || ||||| ||
Sbjct 8978419 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACAATC 8978360
Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321
|| | |||||| | ||| ||||||||||||| | || || ||||||||||| |
Sbjct 8978359 GACAATGTCAAATCCAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGATTG 8978300
Query 31322 ATATTCGCTGGCAAACAGTTGGAAGA 31347
|| || || ||||| |||||||| ||
Sbjct 8978299 ATCTTTGCGGGCAAGCAGTTGGAGGA 8978274
>seq2
Length=7009248
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||||||||| || || || || || || || | || || ||| | ||
Sbjct 3059404 ATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATCA 3059463
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| || || ||||| || || | || || |||||
Sbjct 3059464 GACACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAA 3059523
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || ||||| ||||| |||||||||||| ||| |||| ||||| |||
Sbjct 3059524 CAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAAC 3059583
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| |||||||| || | || |||| ||| | ||| | || ||||
Sbjct 3059584 ATCCAAAAAGAGAGCACATTGCACTTGGTTCTTCGTCTGCGCGGTGGTA 3059632
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/218 (69%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264
|| ||||| || || || || || |||||| | || || ||| | || || | ||||
Sbjct 3058960 GTGAAGACGCTCACTGGAAAGACCATCACCTTGGAGGTGGAATCCTCGGATACCATCGAC 3059019
Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324
| ||||| | || ||||||||| ||| | || || || |||||||| | ||
Sbjct 3059020 AATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGCGCTTGATC 3059079
Query 31325 TTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAACATTCAAAAAGA 31383
|| || ||||| ||| | || || | | | ||| || || || ||||||||||| ||
Sbjct 3059080 TTTGCCGGCAAGCAGCTTGAGGA-TGGACGTACTCTGTCTGACTACAACATTCAAAAGGA 3059138
Query 31384 ATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| |||||||| || || ||| | || | |||||||
Sbjct 3059139 ATCCACTCTTCACCTCGTCCTTCGTCTCCGTGGCGGTA 3059176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766360995440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |