Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 246 3e-60 seq1 96.9 3e-15 seq2 93.3 4e-14 >seq3 Length=5817774 Score = 246 bits (272), Expect = 3e-60 Identities = 490/721 (68%), Gaps = 10/721 (1%) Strand=Plus/Plus Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323 || ||||| ||| ||||||| ||| |||||||| || | || | || || | || Sbjct 3751514 GCCTCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAAAACAGC 3751573 Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 |||| | | || || || || |||| || ||||| || |||| ||||| || Sbjct 3751574 GTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGAGCTAAG 3751633 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 || || || |||||||| || ||||| |||||| ||||| ||| ||||| || || Sbjct 3751634 AAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAGAACTCG 3751693 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || || || || ||||| ||||| ||||| ||||| ||||| || || | ||| || || Sbjct 3751694 AAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACCTGGCCGCTTGTTACCT 3751753 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 || || ||||| || | || ||||| ||| | || | ||||| ||||||| |||||| Sbjct 3751754 CCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTG 3751813 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTC-GA-ACGTTGTGAACGTGGA 23621 || | || | ||| || | || || | |||| || ||| ||| |||| | Sbjct 3751814 GAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGT--ACGTTCA 3751871 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 || |||||||| ||| ||||| |||| || || |||| || ||||| || | Sbjct 3751872 GCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATAC 3751931 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 |||| |||||||||||||| | ||| | |||||| || | ||| |||| || || | Sbjct 3751932 CCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGG 3751991 Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801 || | || ||| || || || |||||| || ||||| | ||||| || || | Sbjct 3751992 TACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGACATGAGGTTAT 3752051 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 | || |||| | | ||||| || || || || || | || || ||||| |||| Sbjct 3752052 AGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACACGCATTATCA 3752111 Query 23862 TGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 ||| ||||||||||| ||||| | ||| |||| | ||||| || || | | Sbjct 3752112 TGTGTTGAGGTCTCTCAGCGACCTT---GCCATTAAGACGAAGTAGATAAGACCGCTCGA 3752168 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 || || || ||||| || | |||||| ||||| ||||||| || ||||| || || | Sbjct 3752169 GGGTCTTGAAACCAAAGTATTGATAGTTGAAGTCTCGATCGTAGACGATGGCAGAGTTAA 3752228 Query 23979 A 23979 | Sbjct 3752229 A 3752229 >seq1 Length=10671843 Score = 96.9 bits (106), Expect = 3e-15 Identities = 275/418 (66%), Gaps = 10/418 (2%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||| || || || ||||| |||||| || || || | || || ||| | Sbjct 3823119 GCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTTTCGCTTCCATCTTCTGGCTT 3823178 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| ||||| || ||||| || ||||| || ||||| | || || ||||||||| Sbjct 3823179 AAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTCAAACGAACTTATCTCTCGCGACGAG 3823238 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGAC---G 58157 ||||| |||||||| || || ||||| | | |||||| | |||| ||||||| | Sbjct 3823239 GGTCTTCATACTGACTTCGCCTGCCTCCTCTTCTCTCA---TCTCAA-CAACCGACCAAG 3823294 Query 58158 CGGGATCGCATCTT--GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215 | | || | || || | || || ||||| ||| | ||||| | ||||| | | Sbjct 3823295 CAAGCAGGC-TGTTCAAGATGTCATTACTGAGGCCGTCACCATCGAGCAAGAGTTCTTGA 3823353 Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 | || || ||||| || || | ||||||||| | | ||||| | ||||| | Sbjct 3823354 CAGAGGCTCTACCTTGCGCTCTGTTAGGTATGAACGCGGGTCTGATGAAGCAATACATCG 3823413 Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAA 58335 | || || || || | || | || | || | || | |||||| ||| || Sbjct 3823414 AATTCGTGGCAGATCGTCTACTCCTAGCTCTCGGTAACCAGAAGTACTACAACGCGACAA 3823473 Query 58336 ATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 |||| || || || ||| | ||| || | | |||||||| ||||| ||||| || Sbjct 3823474 ATCCATTCGACTTCATGGAGTCGATATCATTGGCCGGCAAGACCAACTTCTTCGAGAA 3823531 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || || || || |||||| |||| || ||| || ||||| || Sbjct 8978419 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCGAGCGACACAATC 8978360 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | |||||| | ||| ||||||||||||| | || || ||||||||||| | Sbjct 8978359 GACAATGTCAAATCCAAAATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGATTG 8978300 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGA 31347 || || || ||||| |||||||| || Sbjct 8978299 ATCTTTGCGGGCAAGCAGTTGGAGGA 8978274 >seq2 Length=7009248 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| || || || || || || || | || || ||| | || Sbjct 3059404 ATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATCA 3059463 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||| || || | || || ||||| Sbjct 3059464 GACACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAA 3059523 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| |||||||||||| ||| |||| ||||| ||| Sbjct 3059524 CAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAAC 3059583 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || |||||||| || | || |||| ||| | ||| | || |||| Sbjct 3059584 ATCCAAAAAGAGAGCACATTGCACTTGGTTCTTCGTCTGCGCGGTGGTA 3059632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || ||||| || || || || || |||||| | || || ||| | || || | |||| Sbjct 3058960 GTGAAGACGCTCACTGGAAAGACCATCACCTTGGAGGTGGAATCCTCGGATACCATCGAC 3059019 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | ||||| | || ||||||||| ||| | || || || |||||||| | || Sbjct 3059020 AATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGCGCTTGATC 3059079 Query 31325 TTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAACATTCAAAAAGA 31383 || || ||||| ||| | || || | | | ||| || || || ||||||||||| || Sbjct 3059080 TTTGCCGGCAAGCAGCTTGAGGA-TGGACGTACTCTGTCTGACTACAACATTCAAAAGGA 3059138 Query 31384 ATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| |||||||| || || ||| | || | ||||||| Sbjct 3059139 ATCCACTCTTCACCTCGTCCTTCGTCTCCGTGGCGGTA 3059176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766360995440