Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 127 4e-24 >seq1 Length=10671843 Score = 127 bits (140), Expect = 4e-24 Identities = 152/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 101870 TGGGCTATTAATTGGATGCAAAGCAATAACGAT---TTGGCGGAACTAATTGTTGCCTTT 101926 |||||||| || ||||| ||| || ||| | || || ||| |||||||||| Sbjct 3823065 TGGGCTATCAAATGGATCCAAGATAAGAACTCTACCTTTGCTCAACGCCTTGTTGCCTTC 3823124 Query 101927 GCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAAGAAC 101986 ||||| ||||| || ||||||||||| ||| | ||||| ||||| |||||| | ||||| Sbjct 3823125 GCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTTTCGCTTCCATCTTCTGGCTTAAGAAG 3823184 Query 101987 AGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAGGTCTT 102046 | ||| || |||| ||||| |||| ||| || || | || ||| | ||||| |||||| Sbjct 3823185 CGCGGTCTTATGCCGGGTCTGACCTTCTCAAACGAACTTATCTCTCGCGACGAGGGTCTT 3823244 Query 102047 CATCGCGACTTTGCATGCATGCTGTT 102072 ||| ||||| || ||| | || || Sbjct 3823245 CATACTGACTTCGCCTGCCTCCTCTT 3823270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583911246685