Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq3 132 6e-26
seq1 118 1e-21
>seq3
Length=5817774
Score = 132 bits (146), Expect = 6e-26
Identities = 211/301 (70%), Gaps = 4/301 (1%)
Strand=Plus/Plus
Query 62036 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094
|||| |||| ||||||||||| || |||||||||| | || || || |||||||| |
Sbjct 3750299 CTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATCC 3750358
Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154
| || || ||||| || |||| || ||| ||||| || || | ||| |||
Sbjct 3750359 CAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTGTCG 3750418
Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214
| ||| || |||||||||| ||||||| ||||||||||| || || | ||| ||||
Sbjct 3750419 GGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCAG 3750478
Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62274
|||| | | ||| || |||| ||| ||||||| || || || | ||| ||||
Sbjct 3750479 CCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATAT 3750538
Query 62275 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA 62331
|| | || | || | |||||||||| || ||||| || | ||||| | ||||| |
Sbjct 3750539 CTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAATACGGTTCTTCA 3750598
Query 62332 T 62332
|
Sbjct 3750599 T 3750599
>seq1
Length=10671843
Score = 118 bits (130), Expect = 1e-21
Identities = 307/459 (67%), Gaps = 12/459 (3%)
Strand=Plus/Minus
Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337
|||||| || || ||||| ||||| || || || ||||| || || || || || |
Sbjct 3823565 CATAACACCGGCCTTCTGGTAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 3823506
Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA--AAtttttttAAAT 33395
||||||||| |||||||| || || ||||| || | ||||| | || | | |
Sbjct 3823505 CAATGATATCGACTCCATGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTA-- 3823448
Query 33396 CCCAATTC-AGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACA 33454
|| | | || | | | | |||||| |||||||| || ||| ||||||| |
Sbjct 3823447 CCGAGAGCTAGGAGTAGA-CGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGC 3823389
Query 33455 ATTCATTCCTAT--GAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGAT 33512
||||| |||| ||| || || |||||| | || | || ||||| || ||||
Sbjct 3823388 GTTCATACCTAACAGAGCGCAA--GGTAGAGCCTCTGTCAAGAACTCTTGCTCGATGGTG 3823331
Query 33513 ACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGT-GGATGTAATAAATGTTT 33571
|| || | || || | | | ||| | | | || ||| || ||| | |||
Sbjct 3823330 ACGGCCTCAGTAATGACATCTTGAACAGCCTGCTTGCTTGGTCGGTTGTTG-AGATGAGA 3823272
Query 33572 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631
|| | | || ||||| || || ||||||||||| | | || | |||||| ||
Sbjct 3823271 GAAGAGGAGGCAGGCGAAGTCAGTATGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGA 3823212
Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691
|| || || || ||||| || || ||||| |||||||| || ||||||||||| || ||
Sbjct 3823211 GAAGGTCAGACCCGGCATAAGACCGCGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACC 3823152
Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33730
| ||||||||| || || || ||||| ||||||| |||
Sbjct 3823151 GCTAAAGAAGATACCCTCAACAGCAGCGAAGGCAACAAG 3823113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817544890960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |