Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 132 6e-26 seq1 118 1e-21 >seq3 Length=5817774 Score = 132 bits (146), Expect = 6e-26 Identities = 211/301 (70%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 62036 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094 |||| |||| ||||||||||| || |||||||||| | || || || |||||||| | Sbjct 3750299 CTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATCC 3750358 Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154 | || || ||||| || |||| || ||| ||||| || || | ||| ||| Sbjct 3750359 CAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTGTCG 3750418 Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214 | ||| || |||||||||| ||||||| ||||||||||| || || | ||| |||| Sbjct 3750419 GGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCAG 3750478 Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62274 |||| | | ||| || |||| ||| ||||||| || || || | ||| |||| Sbjct 3750479 CCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATAT 3750538 Query 62275 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA 62331 || | || | || | |||||||||| || ||||| || | ||||| | ||||| | Sbjct 3750539 CTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAATACGGTTCTTCA 3750598 Query 62332 T 62332 | Sbjct 3750599 T 3750599 >seq1 Length=10671843 Score = 118 bits (130), Expect = 1e-21 Identities = 307/459 (67%), Gaps = 12/459 (3%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 |||||| || || ||||| ||||| || || || ||||| || || || || || | Sbjct 3823565 CATAACACCGGCCTTCTGGTAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 3823506 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA--AAtttttttAAAT 33395 ||||||||| |||||||| || || ||||| || | ||||| | || | | | Sbjct 3823505 CAATGATATCGACTCCATGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTA-- 3823448 Query 33396 CCCAATTC-AGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACA 33454 || | | || | | | | |||||| |||||||| || ||| ||||||| | Sbjct 3823447 CCGAGAGCTAGGAGTAGA-CGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGC 3823389 Query 33455 ATTCATTCCTAT--GAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGAT 33512 ||||| |||| ||| || || |||||| | || | || ||||| || |||| Sbjct 3823388 GTTCATACCTAACAGAGCGCAA--GGTAGAGCCTCTGTCAAGAACTCTTGCTCGATGGTG 3823331 Query 33513 ACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGT-GGATGTAATAAATGTTT 33571 || || | || || | | | ||| | | | || ||| || ||| | ||| Sbjct 3823330 ACGGCCTCAGTAATGACATCTTGAACAGCCTGCTTGCTTGGTCGGTTGTTG-AGATGAGA 3823272 Query 33572 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631 || | | || ||||| || || ||||||||||| | | || | |||||| || Sbjct 3823271 GAAGAGGAGGCAGGCGAAGTCAGTATGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGA 3823212 Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691 || || || || ||||| || || ||||| |||||||| || ||||||||||| || || Sbjct 3823211 GAAGGTCAGACCCGGCATAAGACCGCGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACC 3823152 Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 | ||||||||| || || || ||||| ||||||| ||| Sbjct 3823151 GCTAAAGAAGATACCCTCAACAGCAGCGAAGGCAACAAG 3823113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817544890960