Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq3 136 5e-27
seq1 84.2 3e-11
>seq3
Length=5817774
Score = 136 bits (150), Expect = 5e-27
Identities = 212/301 (70%), Gaps = 4/301 (1%)
Strand=Plus/Plus
Query 64829 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 64887
|||| |||| ||||||||||| || |||||||||| | || || || |||||||| |
Sbjct 3750299 CTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATCC 3750358
Query 64888 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947
| || || ||||| || |||| || ||| ||||| || || | ||| |||
Sbjct 3750359 CAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTGTCG 3750418
Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007
| ||| || |||||||||| ||||||| ||||||||||| || || | ||| ||||
Sbjct 3750419 GGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCAG 3750478
Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 65067
|||| | | ||| || |||| ||| ||||||| || || || | ||| ||||
Sbjct 3750479 CCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATAT 3750538
Query 65068 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 65124
|| | || | || | |||||||||| || ||||| || || ||||| | ||||| |
Sbjct 3750539 CTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAATACGGTTCTTCA 3750598
Query 65125 T 65125
|
Sbjct 3750599 T 3750599
>seq1
Length=10671843
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 36173 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 36232
|| ||||||||||| | | || | |||||| || || || || || ||||| || ||
Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187
Query 36233 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 36292
||||| |||||||| || ||||| || || || || |||||| || || || || ||
Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127
Query 36293 GCAAAGGCAATAAG 36306
|| ||||||| |||
Sbjct 3823126 GCGAAGGCAACAAG 3823113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658172742409880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |