Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 132 7e-26 seq1 98.7 1e-15 >seq3 Length=5817774 Score = 132 bits (146), Expect = 7e-26 Identities = 211/301 (70%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 78708 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766 |||| |||| ||||||||||| || |||||||||| | || || || |||||||| | Sbjct 3750299 CTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATCC 3750358 Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826 | || || ||||| || |||| || || ||||| || || | ||| ||| Sbjct 3750359 CAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTGTCG 3750418 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 | ||| || |||||||||| ||||||| ||||||||||| || || | ||| |||| Sbjct 3750419 GGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCAG 3750478 Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 78946 |||| | | ||| || |||| ||| ||||||| || || || | ||| |||| Sbjct 3750479 CCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATAT 3750538 Query 78947 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 79003 || | || | || | |||||||||| || ||||| || || ||||| | ||||| | Sbjct 3750539 CTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAATACGGTTCTTCA 3750598 Query 79004 T 79004 | Sbjct 3750599 T 3750599 >seq1 Length=10671843 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49975 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 50034 || ||||||||||| | | || |||||||| || || || || || ||||| || || Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187 Query 50035 CGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCG 50094 ||||| |||||||| || ||||| || || || || ||||||||| || || || || Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127 Query 50095 GCAAAGGCAACAAG 50108 || ||||||||||| Sbjct 3823126 GCGAAGGCAACAAG 3823113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268737151480