Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq3 132 7e-26
seq1 98.7 1e-15
>seq3
Length=5817774
Score = 132 bits (146), Expect = 7e-26
Identities = 211/301 (70%), Gaps = 4/301 (1%)
Strand=Plus/Plus
Query 78708 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766
|||| |||| ||||||||||| || |||||||||| | || || || |||||||| |
Sbjct 3750299 CTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATCC 3750358
Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826
| || || ||||| || |||| || || ||||| || || | ||| |||
Sbjct 3750359 CAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTGTCG 3750418
Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886
| ||| || |||||||||| ||||||| ||||||||||| || || | ||| ||||
Sbjct 3750419 GGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCAG 3750478
Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 78946
|||| | | ||| || |||| ||| ||||||| || || || | ||| ||||
Sbjct 3750479 CCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATAT 3750538
Query 78947 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 79003
|| | || | || | |||||||||| || ||||| || || ||||| | ||||| |
Sbjct 3750539 CTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAATACGGTTCTTCA 3750598
Query 79004 T 79004
|
Sbjct 3750599 T 3750599
>seq1
Length=10671843
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 49975 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 50034
|| ||||||||||| | | || |||||||| || || || || || ||||| || ||
Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187
Query 50035 CGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCG 50094
||||| |||||||| || ||||| || || || || ||||||||| || || || ||
Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127
Query 50095 GCAAAGGCAACAAG 50108
|| |||||||||||
Sbjct 3823126 GCGAAGGCAACAAG 3823113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268737151480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |