Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq2 116 3e-21
>seq2
Length=7009248
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || || | ||||||||| | ||||||||||| || | |||||||| |||
Sbjct 3059858 CCGCCACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 3059799
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| || || | || |||| || || || ||||||||||| ||||| || || | |||
Sbjct 3059798 AACGTTCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGG 3059739
Query 43003 ACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| ||| ||||| || |||| ||| || || || ||| |||||| | ||| ||
Sbjct 3059738 ATACCCTCTTTGTCCTGGATCTTGCTC-TTAACGTTGTCAATCGTGTCGGAACTCTCAAC 3059680
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || || |||||||| || || || ||||| || |||||
Sbjct 3059679 TTCCAAGGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| || ||||| | | ||||| || | |||||||| ||||| | |||||||| |
Sbjct 3059630 CCACCGCGCAGACGAAGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTC 3059571
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||| || |||| ||||| || |||||||| || |||||||||||||| || | ||
Sbjct 3059570 AGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGG 3059511
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||| ||||| || |||| | ||||| || | | |||||| | |||||
Sbjct 3059510 ATACCCTCTTTGTCTTGGATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCGACT 3059451
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|| | |||||| || || || || || || || || || || ||||||
Sbjct 3059450 TCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACGAAGATCTGCATT 3059403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381369567464406
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |