Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq3 114 2e-20
seq1 96.9 5e-15
>seq3
Length=5817774
Score = 114 bits (126), Expect = 2e-20
Identities = 202/290 (70%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 70791 CTTG-TCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGC 70849
|||| |||| || || ||||| || | ||||||||| | || || || |||||||| |
Sbjct 3750299 CTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATCC 3750358
Query 70850 CTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTA 70908
| || || ||||| || |||| || ||| ||||| || || | ||| || | |
Sbjct 3750359 CAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTG-TC 3750417
Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968
|| || || ||| ||||||| || ||| ||||||||||| || || | ||| |||
Sbjct 3750418 GGGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCA 3750477
Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028
||||| | | ||| || |||| ||| ||||||| || || || | ||| |||
Sbjct 3750478 GCCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATA 3750537
Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075
||| | || | || | |||||||||| || ||||| || ||||||||
Sbjct 3750538 TCTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAAT 3750587
>seq1
Length=10671843
Score = 96.9 bits (106), Expect = 5e-15
Identities = 222/332 (67%), Gaps = 3/332 (1%)
Strand=Plus/Minus
Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATC 42346
|| || || |||| ||||||||| || || || || || | |||||| |||||
Sbjct 3822986 GTGTCGATAGCATCAAAGAGATACGTTCGTTGCTTCTGCTCCTTGATATATGTGTCGATG 3822927
Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406
| ||| || | || || || ||||| || || ||||| || |||||||| |||
Sbjct 3822926 AGAAGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAT 3822867
Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATT 42466
| ||||| | | || ||||| || || || ||| ||| || ||||| || ||
Sbjct 3822866 CGTGCCTCAGGTATTTGAACTTCGCCACTGAAGCGCTCAACTAGGTTCTCGTTGACGATA 3822807
Query 42467 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTG 42524
|| || || |||||||| || | || || || || || |||||| || ||
Sbjct 3822806 CCATCTGATGCAGCAAAAAAGGCGAGGACGTGGGAAATGAAGTAGCGTTCGTCGTCGTTG 3822747
Query 42525 TTAAT-TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAAT 42583
| || |||||||| | | |||||| || | || | ||||| | ||||| |||
Sbjct 3822746 AGTCTGTTGTTCCAATCGTGCAAATCTTTCGAGAGGTCGATCTCTTCCGCGGTCCAGAAT 3822687
Query 42584 GATGCTTCTGCCTTTTTATACATATTCCAGAT 42615
|||||||| ||||| || ||||| | ||||||
Sbjct 3822686 GATGCTTCAGCCTTCTTGTACATCTGCCAGAT 3822655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671139141275320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |