Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 114 2e-20 seq1 96.9 5e-15 >seq3 Length=5817774 Score = 114 bits (126), Expect = 2e-20 Identities = 202/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 70791 CTTG-TCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGC 70849 |||| |||| || || ||||| || | ||||||||| | || || || |||||||| | Sbjct 3750299 CTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATCC 3750358 Query 70850 CTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTA 70908 | || || ||||| || |||| || ||| ||||| || || | ||| || | | Sbjct 3750359 CAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTG-TC 3750417 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || || || ||| ||||||| || ||| ||||||||||| || || | ||| ||| Sbjct 3750418 GGGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCA 3750477 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||| | | ||| || |||| ||| ||||||| || || || | ||| ||| Sbjct 3750478 GCCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATA 3750537 Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075 ||| | || | || | |||||||||| || ||||| || |||||||| Sbjct 3750538 TCTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAAT 3750587 >seq1 Length=10671843 Score = 96.9 bits (106), Expect = 5e-15 Identities = 222/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATC 42346 || || || |||| ||||||||| || || || || || | |||||| ||||| Sbjct 3822986 GTGTCGATAGCATCAAAGAGATACGTTCGTTGCTTCTGCTCCTTGATATATGTGTCGATG 3822927 Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406 | ||| || | || || || ||||| || || ||||| || |||||||| ||| Sbjct 3822926 AGAAGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAT 3822867 Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATT 42466 | ||||| | | || ||||| || || || ||| ||| || ||||| || || Sbjct 3822866 CGTGCCTCAGGTATTTGAACTTCGCCACTGAAGCGCTCAACTAGGTTCTCGTTGACGATA 3822807 Query 42467 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTG 42524 || || || |||||||| || | || || || || || |||||| || || Sbjct 3822806 CCATCTGATGCAGCAAAAAAGGCGAGGACGTGGGAAATGAAGTAGCGTTCGTCGTCGTTG 3822747 Query 42525 TTAAT-TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAAT 42583 | || |||||||| | | |||||| || | || | ||||| | ||||| ||| Sbjct 3822746 AGTCTGTTGTTCCAATCGTGCAAATCTTTCGAGAGGTCGATCTCTTCCGCGGTCCAGAAT 3822687 Query 42584 GATGCTTCTGCCTTTTTATACATATTCCAGAT 42615 |||||||| ||||| || ||||| | |||||| Sbjct 3822686 GATGCTTCAGCCTTCTTGTACATCTGCCAGAT 3822655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139141275320