Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 seq4 91.5 2e-13 >seq1 Length=10671843 Score = 104 bits (114), Expect = 3e-17 Identities = 291/436 (67%), Gaps = 23/436 (5%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || ||||| || || ||||| ||||||||| ||| ||| || ||||||| Sbjct 3823113 CTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTTTCGCTTCCATCTTC 3823172 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||| ||||||||||| || ||||| || ||||| | ||||| |||| ||||| Sbjct 3823173 TGGCTTAAGAAGCGCGGTCTTATGCCGGGTCTGACCTTCTCAAACGAACTTATCTCTCGC 3823232 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCG 125604 |||||||| || || |||||| ||| || || || || || || | | | || Sbjct 3823233 GACGAGGGTCTTCATACTGACTTCGCCTGCCTCCTCTTCTCTCATCTCAACAACCGACCA 3823292 Query 125605 AGTGCAGATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAA 125663 | ||| | | || | | || | |||| | || || ||||| | || || Sbjct 3823293 A--GCA-AGCAGGCTGTTCAAGATGTCA---------TTACTGAGGCCGTCACCATCGAG 3823340 Query 125664 CAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG-CTAAT 125722 |||||||| | || || | ||||| | || | || |||||| || | || || Sbjct 3823341 CAAGAGTTCTTGACAGAGGCTCTACCTTGCGCTCTGTTAGGTATGAAC-GCGGGTCTGAT 3823399 Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG---CCGCAA 125779 | | ||||| || || |||||||||||||||| | | || | | || || || Sbjct 3823400 GAAGCAATACATCGAATTCGTGGCAGATCGTCTAC--TCCTAGCT-CTCGGTAACCAGAA 3823456 Query 125780 GATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGAC 125839 | |||||||| | ||||| || || |||||| |||||| | | || ||||| Sbjct 3823457 GTACTACAACGCGACAAATCCATTCGACTTCATGGAGTCGATATCATTGGCCGGCAAGAC 3823516 Query 125840 CAACTTTTTCGAGAAG 125855 |||||| ||||||||| Sbjct 3823517 CAACTTCTTCGAGAAG 3823532 Score = 95.1 bits (104), Expect = 2e-14 Identities = 185/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| | || || || ||||| | |||||| |||| || Sbjct 3822655 ATCTGGCAGATGTACAAGAAGGCTGAAGCATCATTCTGGACCGCGGAAGAGATCGACCTC 3822714 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || || || || |||||||| | | | | | || || || | || || || Sbjct 3822715 TCGAAAGATTTGCACGATTGGAACAACAGACTCAACGACGACGAACGCTACTTCATTTCC 3822774 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | ||||| ||||| | || ||||| ||||||||||| || || ||||| || Sbjct 3822775 CACGTCCTCGCCTTTTTTGCTGCATCAGATGGTATCGTCAACGAGAACCTAGTTGA-GCG 3822833 Query 125198 ATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 ||| | | |||| | || || |||| ||||| ||||| ||||| ||||||| Sbjct 3822834 CTTCAGTGGCGAAGTTCA-AATACCTGAGGCACGATGCTTCTACGGTTTCCAGATCATGA 3822892 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTC 125284 | |||||| | ||||| || | ||||| Sbjct 3822893 TGGAGAACATCCACTCCGAGACTTACTC 3822920 >seq4 Length=4557415 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||| || || || || ||||| || || ||| |||| | ||| | ||||||| || Sbjct 3811721 GGCGACCTAGGTCCTGTCTACGGTTTTCAATGGCGGCATTTCGGCGCAGAGTATGTGGA- 3811779 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCT 70185 ||||| ||| || ||| | || || || || ||||| || | | ||||| | || Sbjct 3811780 TGCGAAGACTGATTATACTGGGCAAGGGGTCGATCAGCTGGCGGAGGTTATTGAAAAGCT 3811839 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 ||||| ||| || ||| |||| ||| | | || | ||||| || || || || | Sbjct 3811840 CAAGAACAAGCCGTACGATCGGAGAATCATCCTCAGCGCTTGGAACCCGGCGGACTTAAA 3811899 Query 70246 CCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTA 70287 | ||||||||||||||||||||| || || |||||||| Sbjct 3811900 GAAGATGGCACTACCACCGTGTCACATGTTCGCACAGTTTTA 3811941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059135157320