Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 140 7e-28 >seq2 Length=7009248 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||| | ||| || || || | || || ||||||||||| || || || Sbjct 3059405 ATTCCACCACGTAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCG 3059346 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || || || || || || || || || ||||| || || | ||||||||| || Sbjct 3059345 GAAAGTGTCCTCCCATCCTCCAGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGT 3059286 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| ||||| | || ||||| || | ||| || | || Sbjct 3059285 GGGATGCCTTCTTTATCCTGTATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCA 3059226 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| ||||| ||||| || || || |||||||| Sbjct 3059225 ACTTCGAGGGTAATAGTCTTGCCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176 Score = 105 bits (116), Expect = 2e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| |||||||| | |||||||| || || || ||| Sbjct 3058861 GTGGACTCCTTCTGAATGTTGTAGTCCGATAGAGTACGGCCGTCTTCGAGCTGCTTGCCA 3058802 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| ||||| || || || ||||| || ||||||||||| | || Sbjct 3058801 GCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGAATCTTGGACTTG 3058742 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || | ||| || || || ||||| || || || ||||| || || Sbjct 3058741 ACATTATCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGT 3058689 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||||||| || | ||| | || || ||||| || || || || || | |||| Sbjct 3059849 AGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGG 3059790 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || || ||||||||||| | | ||| || || || || || || ||| Sbjct 3059789 CCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCT 3059730 Query 104462 TTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 || ||||| ||| ||||| || || || || | || ||| | || || || | || Sbjct 3059729 TTGTCCTGGATC-TTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGT 3059671 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| || || ||||| |||||||| Sbjct 3059670 GATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398296733956