Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq2 100 2e-16
>seq2
Length=7009248
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | ||| | ||| ||||| || ||||||||||| || ||||||||||| |
Sbjct 3059859 ACCGCCACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGA 3059800
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| ||| | |||||||||||||| || | |||| ||||||||||| ||| |||
Sbjct 3059799 CAACGTTCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGG 3059740
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| || || |||||| || || ||| | | || || |||| | |||
Sbjct 3059739 GATACCCTCTTTGTCCTGGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAAC 3059680
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || || || || ||||| || || || ||||| ||||||||
Sbjct 3059679 TTCCAAGGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Score = 91.5 bits (100), Expect = 1e-13
Identities = 143/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|||||||| | | || || || ||||| ||| |||||| ||||||||||| || |
Sbjct 3058891 CCTCCGCGGAGACGTAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAT 3058832
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| || |||| || |||||||| || || | || || |||||||||||| ||
Sbjct 3058831 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGA 3058772
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | |||||||||| ||| || ||||| | | ||||| || | ||||||| |
Sbjct 3058771 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACC 3058712
Query 48680 TCGACTGTTATGGTTTTACCGGTGA 48704
|| | || ||||| || |||||||
Sbjct 3058711 TCAAGGGTGATGGTCTTGCCGGTGA 3058687
Score = 82.4 bits (90), Expect = 6e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||| ||||||||||||||||| |||| || || | ||||| ||||||
Sbjct 3059150 TGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCCTCAAGCTGC 3059091
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| ||| | | || || ||||||||||| || | | ||||||||| || ||
Sbjct 3059090 TTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTA 3059031
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | | |||||||| | || ||| ||| | || ||||| || || |||
Sbjct 3059030 GCCTTGACATTGTCGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTCTTTCCAGTG 3058971
Query 48704 AGAGTTTTCACAA 48716
|| || |||||||
Sbjct 3058970 AGCGTCTTCACAA 3058958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421251164062007
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |