Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 104 4e-18 seq2 89.7 8e-14 >seq1 Length=10671843 Score = 104 bits (114), Expect = 4e-18 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || ||||||||||| || |||||||| ||||| Sbjct 486203 GCCAAGCGTCACCGGAAGAT-TCTTCGCGACAACATCCAAGGCATAACCAAGCCTGCTAT 486261 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || |||||||| || ||||||||| |||| Sbjct 486262 CCGTCGTCTTGCGCGTCGTGGCGGTGTCAAGCGTATCTC 486300 >seq2 Length=7009248 Score = 89.7 bits (98), Expect = 8e-14 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || || |||| | || || || ||||||||||| || ||||| || || || Sbjct 1832307 CGCCAAACGCCACCGCAAAATCCTCCGCGACAACATCCAAGGCATAACCAAACCGGCCAT 1832248 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 ||| |||||||||||||||||||| ||||||||| || Sbjct 1832247 CCGGCGTCTGGCTCGTCGTGGTGGCGTCAAGCGTATC 1832211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075193599851