Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq3 136 5e-27
seq1 107 2e-18
>seq3
Length=5817774
Score = 136 bits (150), Expect = 5e-27
Identities = 212/301 (70%), Gaps = 4/301 (1%)
Strand=Plus/Plus
Query 61985 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62043
|||| |||| ||||||||||| || |||||||||| | || || || |||||||| |
Sbjct 3750299 CTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATCC 3750358
Query 62044 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62103
| || || ||||| || |||| || ||| ||||| || || | ||| |||
Sbjct 3750359 CAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTGTCG 3750418
Query 62104 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62163
| ||| || |||||||||| ||||||| ||||||||||| || || | ||| ||||
Sbjct 3750419 GGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCAG 3750478
Query 62164 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62223
|||| | | ||| || |||| ||| ||||||| || || || | ||| ||||
Sbjct 3750479 CCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATAT 3750538
Query 62224 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 62280
|| | || | || | |||||||||| || ||||| || || ||||| | ||||| |
Sbjct 3750539 CTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAATACGGTTCTTCA 3750598
Query 62281 T 62281
|
Sbjct 3750599 T 3750599
Score = 111 bits (122), Expect = 2e-19
Identities = 402/626 (64%), Gaps = 10/626 (2%)
Strand=Plus/Plus
Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197
|| |||||||| || | || | ||| || ||| ||||| || || | || || |
Sbjct 3751517 TCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAAAACAGCGTC 3751576
Query 63198 CACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254
|| || | ||| |||| || || ||||| |||||||| || ||||||||||||
Sbjct 3751577 CATTC---GGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGAGCTAAG 3751633
Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314
|| || || | || | |||||| || || |||||| | || | |||| |
Sbjct 3751634 AAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAGAACTCG 3751693
Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374
| | ||| | ||||| || || | ||| | ||| | | || ||||| ||||| |||
Sbjct 3751694 AAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACCTGGCCGCTTGTTACCT 3751753
Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434
|| || || | ||||| ||||||||||| | || | | ||| || | || |||||
Sbjct 3751754 CCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTG 3751813
Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 63494
|| ||||| || |||| || || || |||| | ||| | | ||
Sbjct 3751814 GAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTACGTTCAGC 3751873
Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554
|| || || || ||| | || || || || || || || || || || || ||||||
Sbjct 3751874 CCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACCC 3751933
Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614
|| ||||| || || |||||| | || ||||| | ||| || | | ||
Sbjct 3751934 TCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGGTA 3751993
Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674
|| ||||| || | || || || ||||| || || | || | || | || || ||
Sbjct 3751994 CCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGACATGAGGTTATAG 3752053
Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACA 63732
||||| | | || |||| ||| | ||| || || || |||||||||| ||
Sbjct 3752054 GTCTCGAGGACCTTCTCAATAT--CATCGCCCCAAATGCCAACAGCAACACGCATTATCA 3752111
Query 63733 TGTGCTGAGGTCTTTCAACGATCTTG 63758
|||| |||||||| ||| ||| ||||
Sbjct 3752112 TGTGTTGAGGTCTCTCAGCGACCTTG 3752137
>seq1
Length=10671843
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33319 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 33378
|| ||||||||||| | | || |||||||| || || || || || ||||| || ||
Sbjct 3823246 TGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAAGACCG 3823187
Query 33379 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCA 33438
||||| |||||||| || ||||||||||| || || ||||||||| || || || |||
Sbjct 3823186 CGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAACAGCA 3823127
Query 33439 GCAAAGGCAATAAG 33452
|| ||||||| |||
Sbjct 3823126 GCGAAGGCAACAAG 3823113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622947145492120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |