Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 134 4e-26 >seq3 Length=5817774 Score = 134 bits (148), Expect = 4e-26 Identities = 1069/1725 (62%), Gaps = 89/1725 (5%) Strand=Plus/Minus Query 363415 TCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGT 363474 || || ||| |||| | ||||| | | | ||| | || || || ||| |||||||| Sbjct 3752160 TCTTATCTACTTCGTCTTAATGGCAAGGTCGCTGAGAGACCTCAACACATGATAATGCGT 3752101 Query 363475 GTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTA 363534 |||||| |||| || || ||| |||| | | || || ||||| || | Sbjct 3752100 GTTGCTGTTGGCATTTGGGGCGATGATATTGAGAAGGTCCTCGAGACCTATAACCTCAT- 3752042 Query 363535 AGTGCTCGT-GTA-TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATC 363592 || | | ||| ||||| |||||| ||||||| | | ||||||||| || | | | Sbjct 3752041 -GTCCCAGAAGTACTTCACACACGCCTCGCCAACTCTCTTCAATGCTGGTACCCCGCAAC 3751983 Query 363593 CACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTG 363652 | |||||| | ||||| || || | | ||||| || || ||| |||||||| | | Sbjct 3751982 CGCAGATGGCGTCTTGTTTCCTCATCGACATGAAAGAGGACAGCATTGAGGGTATTTACG 3751923 Query 363653 ACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATC 363711 | || | |||| ||||| | ||||| |||| || || || || || | | || | Sbjct 3751922 ATACCTTGAAGACCTGTGCCTTGATTTCGAAGACGGCGGGAGGCATCGGGCTGAACG-TA 3751864 Query 363712 CACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCT 363770 || | | | || || | | ||||||| ||||||| |||| || || ||| | Sbjct 3751863 CATCGTATCAGAGCCACCGG-CTCTTACATTGCCGGCACAAATGGATCTTCCAACGGGAT 3751805 Query 363771 GGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAA 363830 || || ||||| || || || | || || || || || |||||||| || || || Sbjct 3751804 CGTGCCTATGCTCCGCGTCTTCAATAACACCGCAAGATATGTCGACCAAGGAGGTAACAA 3751745 Query 363831 GCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCT 363890 ||| ||| ||||| || | || || ||||| || |||||| | || ||||| | Sbjct 3751744 GCGGCCAGGTGCGTTCGCCGTCTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCTT 3751685 Query 363891 TGAGCTCCGGAAAAA-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949 || | || || || ||||| || |||||| | || || ||||| || |||| || | Sbjct 3751684 GGACTTGCGCAAGAATCACGGCAAG-GAGGAAGTCCGCGCCCGTGACCTCTTCTTAGCTC 3751626 Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAAT------TGGTCAC 364003 ||||| | || | || |||||||| || ||| |||||| ||| | | Sbjct 3751625 TTTGGACCCCAGATCTCTTCATGAAGCGTGTCGAG------AAGAATGCCGAATGGACGC 3751572 Query 364004 TCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGC-- 364061 | |||||||| | ||| ||| || || | || |||| |||||||| | || || Sbjct 3751571 TGTTTTGCCCCAATGAAGCTCCGGGCCTGGCTGACGTATACGGTGACGAGTTTGAGGCCC 3751512 Query 364062 TCTAT-----------------------------ACGAAAAGTA----TGA--------- 364079 ||||| |||| || || ||| Sbjct 3751511 TCTATGAGAAGTAAGCCACTAGGTCACTATCTTCACGAGAAATAGAGCTGACATGCCGCT 3751452 Query 364080 -------ATCGGAGGGAAAGGC----TCGTAAGACAATTCCCGCACAGAAGCTATGGTTT 364128 || || |||| | | ||| || || || || || ||||||||||| Sbjct 3751451 ACTAGATATGAGAAGGAAGGCCGAGGTCGCAAAACTATCAAAGCTCAAAAGCTATGGTTC 3751392 Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188 | || | || | |||| ||||| || | |||| ||| |||||||||| |||| Sbjct 3751391 TCAATTCTCGAAGCCCAGACGGAGACCGGCAACCCCTTCATGCTGTACAAAGACGCGTGT 3751332 Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGA 364247 ||||||||| |||||| || | || || ||||||| |||| | || || || ||||| Sbjct 3751331 AACCGCAAGAGCAACCAAAAGAATCTCGGCACAATTC-GCAGCTCGAATCTCTGCACCGA 3751273 Query 364248 GATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 ||| | || || || || || || ||| || || || || | || ||| | || || Sbjct 3751272 AATTGTCGAGTATACTGCACCAGATGAGGTAGCAGTTTGCAATTTGGCTTCGCTAGCACT 3751213 Query 364308 TCCGGCGTTTGTAAAAGA------TGGTACTTTTGACCACCAGCATCTTTATGACGTAAC 364361 || | | || | | ||| | |||| | | || | || || Sbjct 3751212 CCCCTCTTACGTCGACGCATCTCGTGGGGAGTATGACTTTGGGAAGCTACACGAGGTTG- 3751154 Query 364362 CTATCA-TGCTACTT-GCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCT 364419 || | | || || | ||||| ||||| ||||||| | || | || ||| | Sbjct 3751153 -TACAAGTCCTTGTTCGAAATCTAAACAAGATTATCGATATCAACCACTACCCAGTCGAA 3751095 Query 364420 GAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCT 364479 || ||| |||| || | | ||| | || || | ||| ||||| ||||| || ||| Sbjct 3751094 GAGGCCAAGCGAAGCAACTTCAGACATAGACCCATCGCTCTCGGTGTCCAGGGGCTTGCT 3751035 Query 364480 GACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAG 364539 || | || | ||| | | || || ||||| || ||| || || | Sbjct 3751034 GATGCCTTCCTAGCGCTTCGCCTTCCGTTCGACTCGCCGGAGGCTAAGCAACTTAACATT 3750975 Query 364540 GAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACC 364599 ||||||| || || || || | || ||||| || || || | ||||||| Sbjct 3750974 CAGATCTTCGAGACCATATACCACGGAGCCATGACAGCCTCCTGCCAAATGGCAAAGGAG 3750915 Query 364600 AAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGAT 364659 ||| |||||||| ||||| || || ||| | ||||| || ||||| | ||| Sbjct 3750914 TCTGGACCCTACTCTACATATGAAGGATCACCTTTGTCGCAAGGCCTTTTCCAATACGAT 3750855 Query 364660 CTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAG 364719 ||||| | ||||| || ||| || ||| | ||| | | || || | || Sbjct 3750854 TTATGGGACGTCACTCCTACTGACCTTTGGGATTGGCAATCACTCAAGGCCGATGTCGCT 3750795 Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAG 364779 || ||||| | ||| | | || ||||||||||| || || ||| || Sbjct 3750794 AAATATGGTGCGAAGAACAGCTTGCTTGTCGCGCCCATGCCGACTGCCAGTACAAGTCAA 3750735 Query 364780 ATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTT 364839 ||||| || ||| || |||||||| || | || ||| ||||||| || || || Sbjct 3750734 ATCCTTGGGTTCAATGAATGCTTCGAGCCCTACACCTCCAACATTTATTCGCGTCGTGTA 3750675 Query 364840 CTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGG 364899 || | ||||| || | || || || | ||| | || || | || || Sbjct 3750674 CTGGCAGGAGAGTTCCAAGTTGTCAACCCTTGGCTACTGAAAGACTTGGTTGATATGGGT 3750615 Query 364900 CTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959 || ||| |||| |||||||||| ||| || |||| |||||| | ||||| ||| Sbjct 3750614 CTTTGGTCCGACAACATGAAGAACCGTATTATTGCCGACGGTGGTTCAATTCAGAATATT 3750555 Query 364960 CCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGA 365019 || | || | |||| | ||| || | ||||| || || ||||| ||||| |||| Sbjct 3750554 CCCAATATACCTGCAGATATCAAGGCTTTATACAAGACAGTTTGGGAGATTTCACAGCGA 3750495 Query 365020 ACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAG 365064 ||| || | | ||||| ||||| ||||||||||| ||| |||| Sbjct 3750494 ACTATCGTGCAGATGGCTGCCGACCGCGGTGCTTTCATCGATCAG 3750450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353483105474