Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq3 134 4e-26
>seq3
Length=5817774
Score = 134 bits (148), Expect = 4e-26
Identities = 1069/1725 (62%), Gaps = 89/1725 (5%)
Strand=Plus/Minus
Query 363415 TCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGT 363474
|| || ||| |||| | ||||| | | | ||| | || || || ||| ||||||||
Sbjct 3752160 TCTTATCTACTTCGTCTTAATGGCAAGGTCGCTGAGAGACCTCAACACATGATAATGCGT 3752101
Query 363475 GTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTA 363534
|||||| |||| || || ||| |||| | | || || ||||| || |
Sbjct 3752100 GTTGCTGTTGGCATTTGGGGCGATGATATTGAGAAGGTCCTCGAGACCTATAACCTCAT- 3752042
Query 363535 AGTGCTCGT-GTA-TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATC 363592
|| | | ||| ||||| |||||| ||||||| | | ||||||||| || | | |
Sbjct 3752041 -GTCCCAGAAGTACTTCACACACGCCTCGCCAACTCTCTTCAATGCTGGTACCCCGCAAC 3751983
Query 363593 CACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTG 363652
| |||||| | ||||| || || | | ||||| || || ||| |||||||| | |
Sbjct 3751982 CGCAGATGGCGTCTTGTTTCCTCATCGACATGAAAGAGGACAGCATTGAGGGTATTTACG 3751923
Query 363653 ACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATC 363711
| || | |||| ||||| | ||||| |||| || || || || || | | || |
Sbjct 3751922 ATACCTTGAAGACCTGTGCCTTGATTTCGAAGACGGCGGGAGGCATCGGGCTGAACG-TA 3751864
Query 363712 CACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCT 363770
|| | | | || || | | ||||||| ||||||| |||| || || ||| |
Sbjct 3751863 CATCGTATCAGAGCCACCGG-CTCTTACATTGCCGGCACAAATGGATCTTCCAACGGGAT 3751805
Query 363771 GGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAA 363830
|| || ||||| || || || | || || || || || |||||||| || || ||
Sbjct 3751804 CGTGCCTATGCTCCGCGTCTTCAATAACACCGCAAGATATGTCGACCAAGGAGGTAACAA 3751745
Query 363831 GCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCT 363890
||| ||| ||||| || | || || ||||| || |||||| | || ||||| |
Sbjct 3751744 GCGGCCAGGTGCGTTCGCCGTCTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCTT 3751685
Query 363891 TGAGCTCCGGAAAAA-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949
|| | || || || ||||| || |||||| | || || ||||| || |||| || |
Sbjct 3751684 GGACTTGCGCAAGAATCACGGCAAG-GAGGAAGTCCGCGCCCGTGACCTCTTCTTAGCTC 3751626
Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAAT------TGGTCAC 364003
||||| | || | || |||||||| || ||| |||||| ||| | |
Sbjct 3751625 TTTGGACCCCAGATCTCTTCATGAAGCGTGTCGAG------AAGAATGCCGAATGGACGC 3751572
Query 364004 TCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGC-- 364061
| |||||||| | ||| ||| || || | || |||| |||||||| | || ||
Sbjct 3751571 TGTTTTGCCCCAATGAAGCTCCGGGCCTGGCTGACGTATACGGTGACGAGTTTGAGGCCC 3751512
Query 364062 TCTAT-----------------------------ACGAAAAGTA----TGA--------- 364079
||||| |||| || || |||
Sbjct 3751511 TCTATGAGAAGTAAGCCACTAGGTCACTATCTTCACGAGAAATAGAGCTGACATGCCGCT 3751452
Query 364080 -------ATCGGAGGGAAAGGC----TCGTAAGACAATTCCCGCACAGAAGCTATGGTTT 364128
|| || |||| | | ||| || || || || || |||||||||||
Sbjct 3751451 ACTAGATATGAGAAGGAAGGCCGAGGTCGCAAAACTATCAAAGCTCAAAAGCTATGGTTC 3751392
Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188
| || | || | |||| ||||| || | |||| ||| |||||||||| ||||
Sbjct 3751391 TCAATTCTCGAAGCCCAGACGGAGACCGGCAACCCCTTCATGCTGTACAAAGACGCGTGT 3751332
Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGA 364247
||||||||| |||||| || | || || ||||||| |||| | || || || |||||
Sbjct 3751331 AACCGCAAGAGCAACCAAAAGAATCTCGGCACAATTC-GCAGCTCGAATCTCTGCACCGA 3751273
Query 364248 GATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307
||| | || || || || || || ||| || || || || | || ||| | || ||
Sbjct 3751272 AATTGTCGAGTATACTGCACCAGATGAGGTAGCAGTTTGCAATTTGGCTTCGCTAGCACT 3751213
Query 364308 TCCGGCGTTTGTAAAAGA------TGGTACTTTTGACCACCAGCATCTTTATGACGTAAC 364361
|| | | || | | ||| | |||| | | || | || ||
Sbjct 3751212 CCCCTCTTACGTCGACGCATCTCGTGGGGAGTATGACTTTGGGAAGCTACACGAGGTTG- 3751154
Query 364362 CTATCA-TGCTACTT-GCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCT 364419
|| | | || || | ||||| ||||| ||||||| | || | || ||| |
Sbjct 3751153 -TACAAGTCCTTGTTCGAAATCTAAACAAGATTATCGATATCAACCACTACCCAGTCGAA 3751095
Query 364420 GAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCT 364479
|| ||| |||| || | | ||| | || || | ||| ||||| ||||| || |||
Sbjct 3751094 GAGGCCAAGCGAAGCAACTTCAGACATAGACCCATCGCTCTCGGTGTCCAGGGGCTTGCT 3751035
Query 364480 GACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAG 364539
|| | || | ||| | | || || ||||| || ||| || || |
Sbjct 3751034 GATGCCTTCCTAGCGCTTCGCCTTCCGTTCGACTCGCCGGAGGCTAAGCAACTTAACATT 3750975
Query 364540 GAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACC 364599
||||||| || || || || | || ||||| || || || | |||||||
Sbjct 3750974 CAGATCTTCGAGACCATATACCACGGAGCCATGACAGCCTCCTGCCAAATGGCAAAGGAG 3750915
Query 364600 AAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGAT 364659
||| |||||||| ||||| || || ||| | ||||| || ||||| | |||
Sbjct 3750914 TCTGGACCCTACTCTACATATGAAGGATCACCTTTGTCGCAAGGCCTTTTCCAATACGAT 3750855
Query 364660 CTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAG 364719
||||| | ||||| || ||| || ||| | ||| | | || || | ||
Sbjct 3750854 TTATGGGACGTCACTCCTACTGACCTTTGGGATTGGCAATCACTCAAGGCCGATGTCGCT 3750795
Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAG 364779
|| ||||| | ||| | | || ||||||||||| || || ||| ||
Sbjct 3750794 AAATATGGTGCGAAGAACAGCTTGCTTGTCGCGCCCATGCCGACTGCCAGTACAAGTCAA 3750735
Query 364780 ATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTT 364839
||||| || ||| || |||||||| || | || ||| ||||||| || || ||
Sbjct 3750734 ATCCTTGGGTTCAATGAATGCTTCGAGCCCTACACCTCCAACATTTATTCGCGTCGTGTA 3750675
Query 364840 CTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGG 364899
|| | ||||| || | || || || | ||| | || || | || ||
Sbjct 3750674 CTGGCAGGAGAGTTCCAAGTTGTCAACCCTTGGCTACTGAAAGACTTGGTTGATATGGGT 3750615
Query 364900 CTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959
|| ||| |||| |||||||||| ||| || |||| |||||| | ||||| |||
Sbjct 3750614 CTTTGGTCCGACAACATGAAGAACCGTATTATTGCCGACGGTGGTTCAATTCAGAATATT 3750555
Query 364960 CCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGA 365019
|| | || | |||| | ||| || | ||||| || || ||||| ||||| ||||
Sbjct 3750554 CCCAATATACCTGCAGATATCAAGGCTTTATACAAGACAGTTTGGGAGATTTCACAGCGA 3750495
Query 365020 ACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAG 365064
||| || | | ||||| ||||| ||||||||||| ||| ||||
Sbjct 3750494 ACTATCGTGCAGATGGCTGCCGACCGCGGTGCTTTCATCGATCAG 3750450
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303353483105474
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |