Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 seq6 82.4 7e-11 >seq2 Length=7009248 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | ||||| || | |||||| ||||||| ||| | Sbjct 3059176 ATGCAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCA 3059235 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| || ||||||||||| || || |||||| Sbjct 3059236 GACACCATCGACAATGTGAAGTCGAAGATACAGGATAAAGAAGGCATCCCACCGGATCAA 3059295 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | ||||||||| || || |||| || | | |||||| ||| Sbjct 3059296 CAGCGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTTCCGATTACAAC 3059355 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| ||||| || || Sbjct 3059356 ATTCAGAAAGAGTCAAC 3059372 >seq6 Length=2243500 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 24078 ATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAA 24137 || || ||||| ||||| || || ||||| |||||| | ||||| | || ||||||||| Sbjct 1182246 ATCACAGACAAGGAAGGTATCCCACCCGACCAACAGCGCCTGATCTTCGCTGGCAAGCAA 1182187 Query 24138 CTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 |||||||||| | | | | || ||| || ||||| || ||||| || || Sbjct 1182186 CTCGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGTCCAC 1182137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935963321085