Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3 140 2e-28 seq2 93.3 3e-14 >seq3 Length=5817774 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3986442 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3986501 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3986502 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3986536 >seq2 Length=7009248 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||| || ||||| |||||||| || | | | || || | || || |||||||| Sbjct 3059367 CTCTTTCTGAATGTTGTAATCGGAAAGTGTCCTCCCATCCTCCAGCTGCTTGCCGGCAAA 3059308 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 ||| || || |||||||| | |||| ||||||||| ||| || || ||||||||| Sbjct 3059307 TATGAGACGCTGTTGATCCGGTGGGATGCCTTCTTTATCCTGTATCTTCGACTTCACATT 3059248 Query 38246 CTGGACAGTATCT--CCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTC 38303 | || || ||| | || |||||||| | |||||||| || || |||| || || Sbjct 3059247 GTCGATGGTGTCTGACGAC--TCAACTTCGAGGGTAATAGTCTTGCCAGTCAGTGTCTTG 3059190 Query 38304 ACGAATATCTGCAT 38317 ||||| |||||||| Sbjct 3059189 ACGAAGATCTGCAT 3059176 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG----T 38163 ||||||||| || ||||||||||| || || |||||||| |||| ||||||| | Sbjct 3059841 CACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACA----ACGTTCGGCCAT 3059786 Query 38164 CGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGT 38223 | || | || || || ||||| || | || || || || | |||| || ||||||| Sbjct 3059785 CCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGT 3059726 Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 || || || ||| || || | | || || ||| |||||||| || || || | Sbjct 3059725 CCTGGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGTGATCG 3059666 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || | || || || || |||||||| Sbjct 3059665 TCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947171424817