Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq3 140 2e-28
seq2 93.3 3e-14
>seq3
Length=5817774
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3986442 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3986501
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 3986502 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3986536
>seq2
Length=7009248
Score = 93.3 bits (102), Expect = 3e-14
Identities = 138/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185
||| || ||||| |||||||| || | | | || || | || || ||||||||
Sbjct 3059367 CTCTTTCTGAATGTTGTAATCGGAAAGTGTCCTCCCATCCTCCAGCTGCTTGCCGGCAAA 3059308
Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245
||| || || |||||||| | |||| ||||||||| ||| || || |||||||||
Sbjct 3059307 TATGAGACGCTGTTGATCCGGTGGGATGCCTTCTTTATCCTGTATCTTCGACTTCACATT 3059248
Query 38246 CTGGACAGTATCT--CCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTC 38303
| || || ||| | || |||||||| | |||||||| || || |||| || ||
Sbjct 3059247 GTCGATGGTGTCTGACGAC--TCAACTTCGAGGGTAATAGTCTTGCCAGTCAGTGTCTTG 3059190
Query 38304 ACGAATATCTGCAT 38317
||||| ||||||||
Sbjct 3059189 ACGAAGATCTGCAT 3059176
Score = 82.4 bits (90), Expect = 5e-11
Identities = 147/214 (69%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG----T 38163
||||||||| || ||||||||||| || || |||||||| |||| ||||||| |
Sbjct 3059841 CACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACA----ACGTTCGGCCAT 3059786
Query 38164 CGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGT 38223
| || | || || || ||||| || | || || || || | |||| || |||||||
Sbjct 3059785 CCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGT 3059726
Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283
|| || || ||| || || | | || || ||| |||||||| || || || |
Sbjct 3059725 CCTGGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGTGATCG 3059666
Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || || || | || || || || ||||||||
Sbjct 3059665 TCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947171424817
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |