Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq3 132 6e-26
seq1 100 4e-16
>seq3
Length=5817774
Score = 132 bits (146), Expect = 6e-26
Identities = 211/301 (70%), Gaps = 4/301 (1%)
Strand=Plus/Plus
Query 61840 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 61898
|||| |||| ||||||||||| || |||||||||| | || || || |||||||| |
Sbjct 3750299 CTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATCC 3750358
Query 61899 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 61958
| || || ||||| || |||| || ||| ||||| || || | ||| |||
Sbjct 3750359 CAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTGTCG 3750418
Query 61959 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62018
| ||| || |||||||||| ||||||| ||||||||||| || || | ||| ||||
Sbjct 3750419 GGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCAG 3750478
Query 62019 CCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62078
|||| | | || || |||| ||| ||||||| || || || | ||| ||||
Sbjct 3750479 CCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATAT 3750538
Query 62079 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 62135
|| | || | || | |||||||||| || ||||| || || ||||| | ||||| |
Sbjct 3750539 CTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAATACGGTTCTTCA 3750598
Query 62136 T 62136
|
Sbjct 3750599 T 3750599
Score = 116 bits (128), Expect = 5e-21
Identities = 575/906 (63%), Gaps = 26/906 (3%)
Strand=Plus/Plus
Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052
|| |||||||| || | || | |||| || ||| ||||| || || | || || |
Sbjct 3751517 TCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAAAACAGCGTC 3751576
Query 63053 CACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63109
|| || | ||| |||| || || ||||| |||||||| || ||||||||||||
Sbjct 3751577 CATTC---GGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGAGCTAAG 3751633
Query 63110 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63169
|| || || | || | |||||| || || |||||| | || | |||| |
Sbjct 3751634 AAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAGAACTCG 3751693
Query 63170 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63229
| | ||| | ||||| || || | ||| | ||| | | || ||||| ||||| |||
Sbjct 3751694 AAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACCTGGCCGCTTGTTACCT 3751753
Query 63230 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 63289
|| || || | ||||| ||||||||||| | || | | ||| || | || || |||
Sbjct 3751754 CCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTG 3751813
Query 63290 GATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 63349
|| | ||||| || || | || || || |||| | ||| | | ||
Sbjct 3751814 GAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTACGTTCAGC 3751873
Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409
|| || || || ||| | || || || || || || || || ||||| || || |||
Sbjct 3751874 CCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACCC 3751933
Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469
|| || || || || |||||| | || ||||| | ||| || | | ||
Sbjct 3751934 TCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGGTA 3751993
Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529
|| ||||| || | || || || ||||| || || | || | || | || || ||
Sbjct 3751994 CCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGACATGAGGTTATAG 3752053
Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACA 63587
||||| | | || |||| ||| | ||| || || || |||||||||| ||
Sbjct 3752054 GTCTCGAGGACCTTCTCAATAT--CATCGCCCCAAATGCCAACAGCAACACGCATTATCA 3752111
Query 63588 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG----GATTTTTCC 63643
|||| |||||||| ||| ||| |||| ||| | |||||| || ||
Sbjct 3752112 TGTGTTGAGGTCTCTCAGCGACCTTG----CCATTAAGACGAAGTAGATAAGACCGCTCG 3752167
Query 63644 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63703
| || || |||||||| || | || |||||||| ||||| | || | |||||
Sbjct 3752168 AGGGTCTTGAAACCAAAGTATTGATAGTTGAAGTCTCGATCGTAGACGATGGCAGAGTTA 3752227
Query 63704 AGTTTATCCTTATATTTGT-TAACTAC-ATC-CATGGTAATACT-TGAAATAATAGGAAA 63759
| | ||| | ||| | | ||| || ||| | || || || |||||
Sbjct 3752228 A----ACTCTTCTGCGTGTCTCATTACGGTCTCATACGTCTGCTGCGAGATCATAGGTGC 3752283
Query 63760 ATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 63819
| ||| |||||||| |||| |||| | | | |||| | ||| | ||| |
Sbjct 3752284 CGGCTTCTTGTTTTTAGGGTTGATGTAGTGGTAGAGATCCGAGACCACCGCTGAAAACTG 3752343
Query 63820 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 63879
|| || |||| |||||||| || ||||| ||||| | ||| || || |||||||||||
Sbjct 3752344 CTTCTTCGTTTGCTTGTGTAGGTTGGATACAGCTATACGAGCTGCGAGGATGGCATAATC 3752403
Query 63880 CGGATG 63885
|||||
Sbjct 3752404 GGGATG 3752409
>seq1
Length=10671843
Score = 100 bits (110), Expect = 4e-16
Identities = 225/335 (67%), Gaps = 5/335 (1%)
Strand=Plus/Minus
Query 32881 TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 32940
|||| || ||||||| ||||||||| || || || || || | |||||| || |
Sbjct 3822988 TTGTGTCGATAGCATCAAAGAGATACGTTCGTTGCTTCTGCTCCTTGATATATGTGTCGA 3822929
Query 32941 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGC 33000
| | ||| || | || || || ||||| || || || || || ||||||||||
Sbjct 3822928 TGAGAAGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGC 3822869
Query 33001 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTA 33060
||| ||||| | || || ||||| || || || || ||| || || || || |
Sbjct 3822868 ATCGTGCCTCAGGTATTTGAACTTCGCCACTGAAGCGCTCAACTAGGTTCTCGTTGACGA 3822809
Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGT 33119
| || || || |||||||| || | || || || || || |||||| | ||
Sbjct 3822808 TACCATCTGATGCAGCAAAAAAGGCGAGGACGTGGGAAATGAAGTAGCGTTCGTCGTCGT 3822749
Query 33120 GTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 33176
| ||| || |||||||| | | |||||| || | || | |||||| | |||||
Sbjct 3822748 -TGAGTCTGTTGTTCCAATCGTGCAAATCTTTCGAGAGGTCGATCTCTTCCGCGGTCCAG 3822690
Query 33177 AATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
|||||||| || ||||| || ||||| | ||||||
Sbjct 3822689 AATGATGCTTCAGCCTTCTTGTACATCTGCCAGAT 3822655
Score = 87.8 bits (96), Expect = 2e-12
Identities = 298/458 (65%), Gaps = 10/458 (2%)
Strand=Plus/Minus
Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416
|||||| || || ||||| ||||| || || || ||||| || || || || || |
Sbjct 3823565 CATAACACCGGCCTTCTGGTAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 3823506
Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATA--AAtttttttAAAT 32474
|||||||| |||||||| ||||||||||| || | || || | || | | |
Sbjct 3823505 CAATGATATCGACTCCATGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTA-- 3823448
Query 32475 CCCAATTC-AGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACA 32533
|| | | || | | | | |||||| || ||||| || ||| ||||||| |
Sbjct 3823447 CCGAGAGCTAGGAGTAGA-CGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGC 3823389
Query 32534 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 32593
||||| |||| || || |||||| | || | || ||||| || || | |||
Sbjct 3823388 GTTCATACCTAACAGAGCGCAAGGTAGAGCCTCTGTCAAGAACTCTTGCTCGATGGTGAC 3823329
Query 32594 CGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTA 32651
|| || || || | | |||| || | | | || ||| | | | |||
Sbjct 3823328 GGCCTCAGTAATGACA--TCTTGAACAGCCTGCTTGCTTGGTCGGTTGTTGAGATGAGAG 3823271
Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711
|| | | || ||||| || || ||||||||||| | | || | |||||| ||
Sbjct 3823270 AAGAGGAGGCAGGCGAAGTCAGTATGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAG 3823211
Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771
|| || || || ||||| || || ||||| |||||||| || ||||| || || || ||
Sbjct 3823210 AAGGTCAGACCCGGCATAAGACCGCGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCG 3823151
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 32809
|||||| || || || || || || ||||||| |||
Sbjct 3823150 CTAAAGAAGATACCCTCAACAGCAGCGAAGGCAACAAG 3823113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631944557200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |