Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 132 6e-26 seq1 100 4e-16 >seq3 Length=5817774 Score = 132 bits (146), Expect = 6e-26 Identities = 211/301 (70%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 61840 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 61898 |||| |||| ||||||||||| || |||||||||| | || || || |||||||| | Sbjct 3750299 CTTGATCCACGGTGAATTGAATAGGTGCGGATGCGGCCATGGTTCGGAGGTAGTACATCC 3750358 Query 61899 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 61958 | || || ||||| || |||| || ||| ||||| || || | ||| ||| Sbjct 3750359 CAGTCTTGAGACCCAGCTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATTGTCG 3750418 Query 61959 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62018 | ||| || |||||||||| ||||||| ||||||||||| || || | ||| |||| Sbjct 3750419 GGTCTTTTAGGTGGATATTCAGAGATTGAGACTGATCGATGAAAGCACCGCGGTCGGCAG 3750478 Query 62019 CCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62078 |||| | | || || |||| ||| ||||||| || || || | ||| |||| Sbjct 3750479 CCATCTGCACGATAGTTCGCTGTGAAATCTCCCAAACTGTCTTGTATAAAGCCTTGATAT 3750538 Query 62079 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 62135 || | || | || | |||||||||| || ||||| || || ||||| | ||||| | Sbjct 3750539 CTGCAGGTATATTGGGAATATTCTGAATTGAACCACCGTCGGCAATAATACGGTTCTTCA 3750598 Query 62136 T 62136 | Sbjct 3750599 T 3750599 Score = 116 bits (128), Expect = 5e-21 Identities = 575/906 (63%), Gaps = 26/906 (3%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || |||||||| || | || | |||| || ||| ||||| || || | || || | Sbjct 3751517 TCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAAAACAGCGTC 3751576 Query 63053 CACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63109 || || | ||| |||| || || ||||| |||||||| || |||||||||||| Sbjct 3751577 CATTC---GGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGAGCTAAG 3751633 Query 63110 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63169 || || || | || | |||||| || || |||||| | || | |||| | Sbjct 3751634 AAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAGAACTCG 3751693 Query 63170 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63229 | | ||| | ||||| || || | ||| | ||| | | || ||||| ||||| ||| Sbjct 3751694 AAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACGCACCTGGCCGCTTGTTACCT 3751753 Query 63230 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 63289 || || || | ||||| ||||||||||| | || | | ||| || | || || ||| Sbjct 3751754 CCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTG 3751813 Query 63290 GATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 63349 || | ||||| || || | || || || |||| | ||| | | || Sbjct 3751814 GAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTACGTTCAGC 3751873 Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || || || ||| | || || || || || || || || ||||| || || ||| Sbjct 3751874 CCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACCC 3751933 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469 || || || || || |||||| | || ||||| | ||| || | | || Sbjct 3751934 TCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGGTA 3751993 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 || ||||| || | || || || ||||| || || | || | || | || || || Sbjct 3751994 CCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTACTTCTGGGACATGAGGTTATAG 3752053 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACA 63587 ||||| | | || |||| ||| | ||| || || || |||||||||| || Sbjct 3752054 GTCTCGAGGACCTTCTCAATAT--CATCGCCCCAAATGCCAACAGCAACACGCATTATCA 3752111 Query 63588 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG----GATTTTTCC 63643 |||| |||||||| ||| ||| |||| ||| | |||||| || || Sbjct 3752112 TGTGTTGAGGTCTCTCAGCGACCTTG----CCATTAAGACGAAGTAGATAAGACCGCTCG 3752167 Query 63644 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63703 | || || |||||||| || | || |||||||| ||||| | || | ||||| Sbjct 3752168 AGGGTCTTGAAACCAAAGTATTGATAGTTGAAGTCTCGATCGTAGACGATGGCAGAGTTA 3752227 Query 63704 AGTTTATCCTTATATTTGT-TAACTAC-ATC-CATGGTAATACT-TGAAATAATAGGAAA 63759 | | ||| | ||| | | ||| || ||| | || || || ||||| Sbjct 3752228 A----ACTCTTCTGCGTGTCTCATTACGGTCTCATACGTCTGCTGCGAGATCATAGGTGC 3752283 Query 63760 ATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 63819 | ||| |||||||| |||| |||| | | | |||| | ||| | ||| | Sbjct 3752284 CGGCTTCTTGTTTTTAGGGTTGATGTAGTGGTAGAGATCCGAGACCACCGCTGAAAACTG 3752343 Query 63820 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 63879 || || |||| |||||||| || ||||| ||||| | ||| || || ||||||||||| Sbjct 3752344 CTTCTTCGTTTGCTTGTGTAGGTTGGATACAGCTATACGAGCTGCGAGGATGGCATAATC 3752403 Query 63880 CGGATG 63885 ||||| Sbjct 3752404 GGGATG 3752409 >seq1 Length=10671843 Score = 100 bits (110), Expect = 4e-16 Identities = 225/335 (67%), Gaps = 5/335 (1%) Strand=Plus/Minus Query 32881 TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 32940 |||| || ||||||| ||||||||| || || || || || | |||||| || | Sbjct 3822988 TTGTGTCGATAGCATCAAAGAGATACGTTCGTTGCTTCTGCTCCTTGATATATGTGTCGA 3822929 Query 32941 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGC 33000 | | ||| || | || || || ||||| || || || || || |||||||||| Sbjct 3822928 TGAGAAGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGC 3822869 Query 33001 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTA 33060 ||| ||||| | || || ||||| || || || || ||| || || || || | Sbjct 3822868 ATCGTGCCTCAGGTATTTGAACTTCGCCACTGAAGCGCTCAACTAGGTTCTCGTTGACGA 3822809 Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGT 33119 | || || || |||||||| || | || || || || || |||||| | || Sbjct 3822808 TACCATCTGATGCAGCAAAAAAGGCGAGGACGTGGGAAATGAAGTAGCGTTCGTCGTCGT 3822749 Query 33120 GTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 33176 | ||| || |||||||| | | |||||| || | || | |||||| | ||||| Sbjct 3822748 -TGAGTCTGTTGTTCCAATCGTGCAAATCTTTCGAGAGGTCGATCTCTTCCGCGGTCCAG 3822690 Query 33177 AATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 |||||||| || ||||| || ||||| | |||||| Sbjct 3822689 AATGATGCTTCAGCCTTCTTGTACATCTGCCAGAT 3822655 Score = 87.8 bits (96), Expect = 2e-12 Identities = 298/458 (65%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 |||||| || || ||||| ||||| || || || ||||| || || || || || | Sbjct 3823565 CATAACACCGGCCTTCTGGTAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 3823506 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATA--AAtttttttAAAT 32474 |||||||| |||||||| ||||||||||| || | || || | || | | | Sbjct 3823505 CAATGATATCGACTCCATGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTA-- 3823448 Query 32475 CCCAATTC-AGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACA 32533 || | | || | | | | |||||| || ||||| || ||| ||||||| | Sbjct 3823447 CCGAGAGCTAGGAGTAGA-CGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGC 3823389 Query 32534 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 32593 ||||| |||| || || |||||| | || | || ||||| || || | ||| Sbjct 3823388 GTTCATACCTAACAGAGCGCAAGGTAGAGCCTCTGTCAAGAACTCTTGCTCGATGGTGAC 3823329 Query 32594 CGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTA 32651 || || || || | | |||| || | | | || ||| | | | ||| Sbjct 3823328 GGCCTCAGTAATGACA--TCTTGAACAGCCTGCTTGCTTGGTCGGTTGTTGAGATGAGAG 3823271 Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 || | | || ||||| || || ||||||||||| | | || | |||||| || Sbjct 3823270 AAGAGGAGGCAGGCGAAGTCAGTATGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAG 3823211 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || || ||||| || || ||||| |||||||| || ||||| || || || || Sbjct 3823210 AAGGTCAGACCCGGCATAAGACCGCGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCG 3823151 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 32809 |||||| || || || || || || ||||||| ||| Sbjct 3823150 CTAAAGAAGATACCCTCAACAGCAGCGAAGGCAACAAG 3823113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631944557200