Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 seq6 86.0 5e-12 >seq2 Length=7009248 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || | || || ||||||| |||||||| Sbjct 3059176 ATGCAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCA 3059235 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || || || |||||||| || ||||| || ||| Sbjct 3059236 GACACCATCGACAATGTGAAGTCGAAGATACAGGATAAAGAAGGCATCCCACCGGATCAA 3059295 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| | || | ||||||||| Sbjct 3059296 CAGCGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTTCCGATTACAAC 3059355 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| ||||| || || || || | || || | ||| | || |||| Sbjct 3059356 ATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTACGTGGTGGAA 3059404 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || |||||||| | || || || | || || | ||||| || || || Sbjct 3059403 AATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATC 3059462 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| || ||| |||||||| || || ||||| ||||| Sbjct 3059463 AGACACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCA 3059522 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || |||||||| || || ||||| | || || || | |||||||| Sbjct 3059523 ACAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAA 3059582 Query 25178 TATTCAAAAAGA 25189 || |||||||| Sbjct 3059583 CATCCAAAAAGA 3059594 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 25009 TTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCG 25068 |||| ||||| | || || || ||||||| | || ||||| || || || || |||| Sbjct 3058958 TTGTGAAGACGCTCACTGGAAAGACCATCACCTTGGAGGTGGAATCCTCGGATACCATCG 3059017 Query 25069 AGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGAT 25126 | || || ||| || ||| ||||| || || ||||| || || || ||||| | Sbjct 3059018 A--CAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGCGCTT 3059075 Query 25127 TATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186 || ||||||||||| || | || |||| || ||| || || ||||| |||||||| Sbjct 3059076 GATCTTTGCCGGCAAGCAGCTTGAGGATGGACGTACTCTGTCTGACTACAACATTCAAAA 3059135 Query 25187 AGAATCCACGCTACA 25201 |||||||| || || Sbjct 3059136 GGAATCCACTCTTCA 3059150 >seq6 Length=2243500 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25086 ATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAA 25145 ||||| ||||| ||||| || ||||| ||||||||||| | || || || ||||| ||| Sbjct 1182246 ATCACAGACAAGGAAGGTATCCCACCCGACCAACAGCGCCTGATCTTCGCTGGCAAGCAA 1182187 Query 25146 TTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTA 25205 | ||||||| ||||| | ||| ||||| || || ||||| ||||| || || | Sbjct 1182186 CTCGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTG 1182127 Query 25206 GTGCT 25210 ||||| Sbjct 1182126 GTGCT 1182122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327963031705