Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 102 7e-17
seq6 86.0 5e-12
>seq2
Length=7009248
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||| || || | || || ||||||| ||||||||
Sbjct 3059176 ATGCAGATCTTCGTCAAGACACTGACTGGCAAGACTATTACCCTCGAAGTTGAGTCGTCA 3059235
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| ||||| || || || |||||||| || ||||| || |||
Sbjct 3059236 GACACCATCGACAATGTGAAGTCGAAGATACAGGATAAAGAAGGCATCCCACCGGATCAA 3059295
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||||||||| || | || |||| | || | |||||||||
Sbjct 3059296 CAGCGTCTCATATTTGCCGGCAAGCAGCTGGAGGATGGGAGGACACTTTCCGATTACAAC 3059355
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
||||| ||||| || || || || | || || | ||| | || ||||
Sbjct 3059356 ATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTACGTGGTGGAA 3059404
Score = 98.7 bits (108), Expect = 9e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || |||||||| | || || || | || || | ||||| || || ||
Sbjct 3059403 AATGCAGATCTTCGTAAAGACGCTTACTGGGAAGACAATAACGCTGGAAGTCGAATCATC 3059462
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| | ||| || ||| |||||||| || || ||||| |||||
Sbjct 3059463 AGACACAATCGACAACGTCAAGTCGAAGATCCAAGACAAAGAGGGTATCCCACCAGACCA 3059522
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || || |||||||| || || ||||| | || || || | ||||||||
Sbjct 3059523 ACAGCGATTGATCTTCGCCGGCAAGCAGTTGGAAGACGGCCGGACACTGAGTGATTACAA 3059582
Query 25178 TATTCAAAAAGA 25189
|| ||||||||
Sbjct 3059583 CATCCAAAAAGA 3059594
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/195 (71%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 25009 TTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCG 25068
|||| ||||| | || || || ||||||| | || ||||| || || || || ||||
Sbjct 3058958 TTGTGAAGACGCTCACTGGAAAGACCATCACCTTGGAGGTGGAATCCTCGGATACCATCG 3059017
Query 25069 AGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGAT 25126
| || || ||| || ||| ||||| || || ||||| || || || ||||| |
Sbjct 3059018 A--CAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGCGCTT 3059075
Query 25127 TATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186
|| ||||||||||| || | || |||| || ||| || || ||||| ||||||||
Sbjct 3059076 GATCTTTGCCGGCAAGCAGCTTGAGGATGGACGTACTCTGTCTGACTACAACATTCAAAA 3059135
Query 25187 AGAATCCACGCTACA 25201
|||||||| || ||
Sbjct 3059136 GGAATCCACTCTTCA 3059150
>seq6
Length=2243500
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 25086 ATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAA 25145
||||| ||||| ||||| || ||||| ||||||||||| | || || || ||||| |||
Sbjct 1182246 ATCACAGACAAGGAAGGTATCCCACCCGACCAACAGCGCCTGATCTTCGCTGGCAAGCAA 1182187
Query 25146 TTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTA 25205
| ||||||| ||||| | ||| ||||| || || ||||| ||||| || || |
Sbjct 1182186 CTCGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTG 1182127
Query 25206 GTGCT 25210
|||||
Sbjct 1182126 GTGCT 1182122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327963031705
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |