Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq4 91.5 3e-13
>seq4
Length=4557415
Score = 91.5 bits (100), Expect = 3e-13
Identities = 95/122 (78%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||| || || ||||||||||| || || || ||||| |||| ||| ||
Sbjct 1599213 CTCACTCGCGTATGCGCGGTCTTTCAGGTGGTCAACGTGTCAAGGTTGTGCTCGCTGCTT 1599154
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
|||| ||||||| |||||| |||||||||||||||| ||||| |||||||| || |||
Sbjct 1599153 GCTCA-TGGCAACGACCTCACTTGATCGTTCTCGACGAACCTACTAACTATCTCGATCGC 1599095
Query 280821 GA 280822
||
Sbjct 1599094 GA 1599093
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| ||||| || || ||||||||||||||||||||||| | |||||||||| | ||
Sbjct 3662591 GTCGGTTCGCTCTCTGGTGGTTGGAAGATGAAGCTGGCGTTGGCTCGCGCCATGTTGATG 3662650
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811
| |||||||| ||||||| || || || || || ||| ||||| |||||||
Sbjct 3662651 GGCGCCGATGTGTTACTGCTCGACGAACCGACGAATCACTTGGACGTTGCCAACGT 3662706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836707815887
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |