Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 3e-13 >seq4 Length=4557415 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || ||||||||||| || || || ||||| |||| ||| || Sbjct 1599213 CTCACTCGCGTATGCGCGGTCTTTCAGGTGGTCAACGTGTCAAGGTTGTGCTCGCTGCTT 1599154 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| ||||||| |||||| |||||||||||||||| ||||| |||||||| || ||| Sbjct 1599153 GCTCA-TGGCAACGACCTCACTTGATCGTTCTCGACGAACCTACTAACTATCTCGATCGC 1599095 Query 280821 GA 280822 || Sbjct 1599094 GA 1599093 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||||| || || ||||||||||||||||||||||| | |||||||||| | || Sbjct 3662591 GTCGGTTCGCTCTCTGGTGGTTGGAAGATGAAGCTGGCGTTGGCTCGCGCCATGTTGATG 3662650 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 | |||||||| ||||||| || || || || || ||| ||||| ||||||| Sbjct 3662651 GGCGCCGATGTGTTACTGCTCGACGAACCGACGAATCACTTGGACGTTGCCAACGT 3662706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836707815887