Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 181 2e-40 seq1 141 2e-28 seq6 120 6e-22 >seq2 Length=7009248 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||||||| | ||| ||||||||||||||| ||||| Sbjct 3059630 CCACCGCGCAGACGAAGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTC 3059571 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||||| || ||||| |||||||| |||||||| || | || |||||||| ||||| Sbjct 3059570 AGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGG 3059511 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || |||||||| ||||| | ||||||| ||||| ||||||| |||||| ||| Sbjct 3059510 ATACCCTCTTTGTCTTGGATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCGACT 3059451 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| || || || || || || || ||||| ||||| ||||||||| Sbjct 3059450 TCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACGAAGATCTGCATT 3059403 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | || | ||| || || |||||||| || ||||| ||||||| Sbjct 3059404 TTCCACCACGTAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCGG 3059345 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | |||||||||||||| || | |||||| ||||| |||||||| | ||||| || |||| Sbjct 3059344 AAAGTGTCCTCCCATCCTCCAGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGTG 3059285 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | |||||||| || || || ||||| | ||| || ||||||||||||| || || | Sbjct 3059284 GGATGCCTTCTTTATCCTGTATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCAA 3059225 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | ||| || || || || || || ||||||||||| |||||||| Sbjct 3059224 CTTCGAGGGTAATAGTCTTGCCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176 Score = 140 bits (154), Expect = 6e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || || | |||||||| || |||||||| || || ||||| || || || Sbjct 3058891 CCTCCGCGGAGACGTAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAT 3058832 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || | | || || || || ||| Sbjct 3058831 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGA 3058772 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| | |||||| ||||||||||| | || || || Sbjct 3058771 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACC 3058712 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 3058711 TCAAGGGTGATGGTCTTGCCGGTGA 3058687 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || ||||| || ||||| ||||| || || || Sbjct 3059174 CCGCCACGGAGACGAAGGACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAC 3059115 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || | | || || || || ||| Sbjct 3059114 AGAGTACGTCCATCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGA 3059055 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| |||||||| || | ||||| || Sbjct 3059054 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTATCCGAGGATTCCACC 3058995 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 |||||||||||||| ||||| ||||| ||||| || Sbjct 3058994 TCCAAGGTGATGGTCTTTCCAGTGAGCGTCTTCAC 3058960 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | | ||||| || || ||| ||| || |||||||| ||||| || Sbjct 3059858 CCGCCACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 3059799 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | ||||||||| || || || | | || ||||| || || Sbjct 3059798 AACGTTCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGG 3059739 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| || ||||| ||| ||| || || ||||| | || ||| Sbjct 3059738 ATACCCTCTTTGTCCTGGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACT 3059679 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || ||||| || || |||||||| || |||||||| Sbjct 3059678 TCCAAGGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 >seq1 Length=10671843 Score = 141 bits (156), Expect = 2e-28 Identities = 141/180 (78%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| ||||| | ||||| || |||||||| || || || || Sbjct 8978241 TTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGATC 8978300 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| ||||| |||||||||||||| || || || | ||||| ||| Sbjct 8978301 AATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGTCG 8978360 Query 68394 ATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| ||| ||||| || || | ||||||||| || |||||||||||||||||||| Sbjct 8978361 ATTGTGTC-GCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 8978419 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| || || ||||||||||| || ||||| |||||||||||||| |||||| | Sbjct 3823565 CATAACACCGGCCTTCTGGTAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 3823506 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 | || || |||||||||||| || || || ||| | | ||| ||| ||| Sbjct 3823505 CAATGATATCGACTCCATGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTACC 3823446 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| ||| || | || || |||||||| |||||||| || ||||||| ||| ||| Sbjct 3823445 GAGAGCTAGGAGTAGACGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGCGTT 3823386 Query 10115 CATGCC 10120 ||| || Sbjct 3823385 CATACC 3823380 >seq6 Length=2243500 Score = 120 bits (132), Expect = 6e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || |||| |||| ||| || ||||||||||| |||||||| || ||||| Sbjct 1182106 TCCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGA 1182165 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | |||||||| | ||||| || ||||| || || | |||||||||||||| Sbjct 1182166 GAGGGTGCGGCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGG 1182225 Query 68354 AATGCCTTCCTTGTCT 68369 || |||||||||||| Sbjct 1182226 GATACCTTCCTTGTCT 1182241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622319358040