Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq2 181 2e-40
seq1 141 2e-28
seq6 120 6e-22
>seq2
Length=7009248
Score = 181 bits (200), Expect = 2e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||||||| | ||| ||||||||||||||| |||||
Sbjct 3059630 CCACCGCGCAGACGAAGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTC 3059571
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||||| || ||||| |||||||| |||||||| || | || |||||||| |||||
Sbjct 3059570 AGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGG 3059511
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || |||||||| ||||| | ||||||| ||||| ||||||| |||||| |||
Sbjct 3059510 ATACCCTCTTTGTCTTGGATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCGACT 3059451
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||| || || || || || || || ||||| ||||| |||||||||
Sbjct 3059450 TCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACGAAGATCTGCATT 3059403
Score = 179 bits (198), Expect = 7e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
|||| || || || || | || | ||| || || |||||||| || ||||| |||||||
Sbjct 3059404 TTCCACCACGTAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCGG 3059345
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
| |||||||||||||| || | |||||| ||||| |||||||| | ||||| || ||||
Sbjct 3059344 AAAGTGTCCTCCCATCCTCCAGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGTG 3059285
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
| |||||||| || || || ||||| | ||| || ||||||||||||| || || |
Sbjct 3059284 GGATGCCTTCTTTATCCTGTATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCAA 3059225
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| | ||| || || || || || || ||||||||||| ||||||||
Sbjct 3059224 CTTCGAGGGTAATAGTCTTGCCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176
Score = 140 bits (154), Expect = 6e-28
Identities = 154/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|||||||| || || | |||||||| || |||||||| || || ||||| || || ||
Sbjct 3058891 CCTCCGCGGAGACGTAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAT 3058832
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | |||||| || ||||| || | | || || || || |||
Sbjct 3058831 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGGGGA 3058772
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| |||||||| | |||||| ||||||||||| | || || ||
Sbjct 3058771 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTATCGATGGTGTCCGAAGACTCCACC 3058712
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | ||||||||| || || ||||
Sbjct 3058711 TCAAGGGTGATGGTCTTGCCGGTGA 3058687
Score = 140 bits (154), Expect = 6e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| || ||||| || ||||| ||||| || || ||
Sbjct 3059174 CCGCCACGGAGACGAAGGACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAC 3059115
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| ||||| || || | | || || || || |||
Sbjct 3059114 AGAGTACGTCCATCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGGA 3059055
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| |||||||| |||||||| || | ||||| ||
Sbjct 3059054 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTATCCGAGGATTCCACC 3058995
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449
|||||||||||||| ||||| ||||| ||||| ||
Sbjct 3058994 TCCAAGGTGATGGTCTTTCCAGTGAGCGTCTTCAC 3058960
Score = 116 bits (128), Expect = 7e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| | | ||||| || || ||| ||| || |||||||| ||||| ||
Sbjct 3059858 CCGCCACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 3059799
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || | ||||||||| || || || | | || ||||| || ||
Sbjct 3059798 AACGTTCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGG 3059739
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || ||||| || ||||| ||| ||| || || ||||| | || |||
Sbjct 3059738 ATACCCTCTTTGTCCTGGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAACT 3059679
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||||||| || ||||| || || |||||||| || ||||||||
Sbjct 3059678 TCCAAGGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
>seq1
Length=10671843
Score = 141 bits (156), Expect = 2e-28
Identities = 141/180 (78%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || ||||| ||||| | ||||| || |||||||| || || || ||
Sbjct 8978241 TTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGATC 8978300
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| || || ||||| ||||| |||||||||||||| || || || | ||||| |||
Sbjct 8978301 AATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGTCG 8978360
Query 68394 ATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| ||||| ||| ||||| || || | ||||||||| || ||||||||||||||||||||
Sbjct 8978361 ATTGTGTC-GCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 8978419
Score = 93.3 bits (102), Expect = 8e-14
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
||| || || ||||||||||| || ||||| |||||||||||||| |||||| |
Sbjct 3823565 CATAACACCGGCCTTCTGGTAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 3823506
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
| || || |||||||||||| || || || ||| | | ||| ||| |||
Sbjct 3823505 CAATGATATCGACTCCATGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTACC 3823446
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| ||| || | || || |||||||| |||||||| || ||||||| ||| |||
Sbjct 3823445 GAGAGCTAGGAGTAGACGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGCGTT 3823386
Query 10115 CATGCC 10120
||| ||
Sbjct 3823385 CATACC 3823380
>seq6
Length=2243500
Score = 120 bits (132), Expect = 6e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
||| || || || |||| |||| ||| || ||||||||||| |||||||| || |||||
Sbjct 1182106 TCCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGA 1182165
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
||| || | |||||||| | ||||| || ||||| || || | ||||||||||||||
Sbjct 1182166 GAGGGTGCGGCCATCTTCGAGTTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGTGG 1182225
Query 68354 AATGCCTTCCTTGTCT 68369
|| ||||||||||||
Sbjct 1182226 GATACCTTCCTTGTCT 1182241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622319358040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |