Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 >seq2 Length=7009248 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || ||||| |||||||||||||| || Sbjct 3059177 ATACCGCCACGGAGACGAAGGACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCA 3059118 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||| ||||| || || || || |||| | ||||| || || ||| Sbjct 3059117 GACAGAGTACGTCCATCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGA 3059058 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | || | ||| || | |||||| Sbjct 3059057 GGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTATCCGAGGATTCC 3058998 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 || |||| ||| | || || || || || || || |||| Sbjct 3058997 ACCTCCAAGGTGATGGTCTTTCCAGTGAGCGTCTTCACAA 3058958 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | || | || || ||||| ||||||||||||||| Sbjct 3059405 ATTCCACCACGTAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCG 3059346 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||| || || || || || || | |||||||||||||| ||||| Sbjct 3059345 GAAAGTGTCCTCCCATCCTCCAGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGT 3059286 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||||||||| || ||||| || | | || | |||||| | || || Sbjct 3059285 GGGATGCCTTCTTTATCCTGTATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCA 3059226 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || || || |||||||| Sbjct 3059225 ACTTCGAGGGTAATAGTCTTGCCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 |||||||| ||||||||||| |||| || || ||||| | || || || ||| || Sbjct 3059594 TCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAAG 3059535 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||||||||||| || || || || |||||||| ||||| || | | Sbjct 3059534 ATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTCGACTTGACGTTG 3059475 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | ||||| | |||||||| |||| || | || || || || || || ||||| Sbjct 3059474 TCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACG 3059415 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 3059414 AAGATCTGCAT 3059404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || || | || ||||| | || || || || ||||||||||| Sbjct 3059859 ACCGCCACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGA 3059800 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || ||| || || || || ||||| | || | |||||| |||||||| || Sbjct 3059799 CAACGTTCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGG 3059740 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || |||||||| ||||| || | | |||| ||||||| || || Sbjct 3059739 GATACCCTCTTTGTCCTGGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTCTCAAC 3059680 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 3059679 TTCCAAGGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134364157284