Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 145 1e-29 seq1 143 5e-29 >seq3 Length=5817774 Score = 145 bits (160), Expect = 1e-29 Identities = 310/452 (69%), Gaps = 22/452 (5%) Strand=Plus/Plus Query 244999 CTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCT 245058 || ||| | || ||||||||| || ||| |||| || || ||||||||| | || | Sbjct 3751591 CTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGAGCTAAGAAGAGGTCACGGGCGCG 3751650 Query 245059 CTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCC 245117 || ||| ||| ||| ||||| | || ||||| || || ||||| ||| |||||| Sbjct 3751651 GACTTCCTCCTTGCC-GTGATTCTTGCGCAAGTCCAAGAACTCGAAGACATCGGCGTGCC 3751709 Query 245118 AGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCC 245177 ||||||| | |||||| |||| || || ||||||||||| ||||| ||||| | ||| Sbjct 3751710 AGGGCTCAAGGTAGACGGCGAACGCACCTGGCCGCTTGTTACCTCCTTGGTCGA-CAT-A 3751767 Query 245178 TCTCGAGCGCG---TTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGG 245234 ||| | | | | ||||||| ||| || ||||||| || ||||| || || || | Sbjct 3751768 TCTTGCG-GTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTGGAAGATCCATTTG 3751826 Query 245235 TGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCG---- 245290 |||| ||||| | ||| || | |||| | | |||| || | | || ||| Sbjct 3751827 TGCCGGCAATGTAAGAGCCGGTGGCTCTGA---TAC-GATGTACGTTC--AGCCCGATGC 3751880 Query 245291 ---CCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATG 245347 ||| ||| ||| || || | ||| ||| |||| | ||| || || ||||| ||| Sbjct 3751881 CTCCCGCCGT-CTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACCCTCAATG 3751939 Query 245348 CTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAG 245407 |||||| ||||||| || || || || || | || ||| || | ||| | | | Sbjct 3751940 CTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGGTACCAGCA 3751999 Query 245408 TTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||||| ||||| || |||||| || ||||| Sbjct 3752000 TTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTA 3752031 >seq1 Length=10671843 Score = 143 bits (158), Expect = 5e-29 Identities = 345/512 (67%), Gaps = 25/512 (5%) Strand=Plus/Plus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 ||||| || |||||||| |||| |||||| | | || | || || | | | Sbjct 3823053 AAGAAAGCCGACTGGGCTATCAAATGGATCCAAGATAAGAACTCTACCTTTGCTCAACGC 3823112 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 || || ||||| | || || ||||| |||||||| || | ||||| ||||||||| Sbjct 3823113 CTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTTTCGCTTCCATCTTC 3823172 Query 42765 TGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||||| ||| || ||| | ||||| || || |||||||| |||||||| ||| | Sbjct 3823173 TGGCTTAAGAAGCGCGGTCT-TATGCCGGGTCTGACCTTCTCAAACGAACTTATCTCTCG 3823231 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA 42883 |||||||| || |||| ||||| ||||||||||| ||||| || |||| |||| Sbjct 3823232 CGACGAGGGTCTTCATACTGACTTCGCCTGCCTCCTCTTCTC---TCATCTCA---ACAA 3823285 Query 42884 --GCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 | || | ||| || || | | |||| || |||||||| |||||| | || Sbjct 3823286 CCGACCAAGCAAGCAGGCTGTTCAAGATGTCATTACTGAGGCCGTCACCATCGAGCAAGA 3823345 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATG-TGCA 42999 |||| | || || | || || | ||| | || |||||| | || ||| ||| Sbjct 3823346 GTTCTTGACAGAGGCTCTACCTTGCGCTCTGTTAGGTATGAACGCGGGTCTGATGAAGCA 3823405 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC------ 43053 | |||||| | | ||| || || | ||| || || | | |||| | || Sbjct 3823406 A-TACATCGAATTCGTGGCAGATCGTCTACT---CC---TAGCTCTCGGTAACCAGAAGT 3823458 Query 43054 TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113 ||||||| || | || |||||||| |||||| || || |||| |||||||||| Sbjct 3823459 ACTACAACGCGACAAATCCATTCGACTTCATGGAGTCGATATCATTGGCCGGCAAGACCA 3823518 Query 43114 ACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||| ||||||||||| || | ||||||||| Sbjct 3823519 ACTTCTTCGAGAAGCGGGTTGGTGACTACCAG 3823550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339117370320