Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq3 145 1e-29
seq1 143 5e-29
>seq3
Length=5817774
Score = 145 bits (160), Expect = 1e-29
Identities = 310/452 (69%), Gaps = 22/452 (5%)
Strand=Plus/Plus
Query 244999 CTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCT 245058
|| ||| | || ||||||||| || ||| |||| || || ||||||||| | || |
Sbjct 3751591 CTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGAGCTAAGAAGAGGTCACGGGCGCG 3751650
Query 245059 CTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCC 245117
|| ||| ||| ||| ||||| | || ||||| || || ||||| ||| ||||||
Sbjct 3751651 GACTTCCTCCTTGCC-GTGATTCTTGCGCAAGTCCAAGAACTCGAAGACATCGGCGTGCC 3751709
Query 245118 AGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCC 245177
||||||| | |||||| |||| || || ||||||||||| ||||| ||||| | |||
Sbjct 3751710 AGGGCTCAAGGTAGACGGCGAACGCACCTGGCCGCTTGTTACCTCCTTGGTCGA-CAT-A 3751767
Query 245178 TCTCGAGCGCG---TTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGG 245234
||| | | | | ||||||| ||| || ||||||| || ||||| || || || |
Sbjct 3751768 TCTTGCG-GTGTTATTGAAGACGCGGAGCATAGGCACGATCCCGTTGGAAGATCCATTTG 3751826
Query 245235 TGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCG---- 245290
|||| ||||| | ||| || | |||| | | |||| || | | || |||
Sbjct 3751827 TGCCGGCAATGTAAGAGCCGGTGGCTCTGA---TAC-GATGTACGTTC--AGCCCGATGC 3751880
Query 245291 ---CCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATG 245347
||| ||| ||| || || | ||| ||| |||| | ||| || || ||||| |||
Sbjct 3751881 CTCCCGCCGT-CTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTAAATACCCTCAATG 3751939
Query 245348 CTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAG 245407
|||||| ||||||| || || || || || | || ||| || | ||| | | |
Sbjct 3751940 CTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTGCGGGGTACCAGCA 3751999
Query 245408 TTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439
||||| ||||| || |||||| || |||||
Sbjct 3752000 TTGAAGAGAGTTGGCGAGGCGTGTGTGAAGTA 3752031
>seq1
Length=10671843
Score = 143 bits (158), Expect = 5e-29
Identities = 345/512 (67%), Gaps = 25/512 (5%)
Strand=Plus/Plus
Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704
||||| || |||||||| |||| |||||| | | || | || || | | |
Sbjct 3823053 AAGAAAGCCGACTGGGCTATCAAATGGATCCAAGATAAGAACTCTACCTTTGCTCAACGC 3823112
Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764
|| || ||||| | || || ||||| |||||||| || | ||||| |||||||||
Sbjct 3823113 CTTGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTTAGCGGTTCTTTCGCTTCCATCTTC 3823172
Query 42765 TGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823
||||| ||| || ||| | ||||| || || |||||||| |||||||| ||| |
Sbjct 3823173 TGGCTTAAGAAGCGCGGTCT-TATGCCGGGTCTGACCTTCTCAAACGAACTTATCTCTCG 3823231
Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA 42883
|||||||| || |||| ||||| ||||||||||| ||||| || |||| ||||
Sbjct 3823232 CGACGAGGGTCTTCATACTGACTTCGCCTGCCTCCTCTTCTC---TCATCTCA---ACAA 3823285
Query 42884 --GCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940
| || | ||| || || | | |||| || |||||||| |||||| | ||
Sbjct 3823286 CCGACCAAGCAAGCAGGCTGTTCAAGATGTCATTACTGAGGCCGTCACCATCGAGCAAGA 3823345
Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATG-TGCA 42999
|||| | || || | || || | ||| | || |||||| | || ||| |||
Sbjct 3823346 GTTCTTGACAGAGGCTCTACCTTGCGCTCTGTTAGGTATGAACGCGGGTCTGATGAAGCA 3823405
Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC------ 43053
| |||||| | | ||| || || | ||| || || | | |||| | ||
Sbjct 3823406 A-TACATCGAATTCGTGGCAGATCGTCTACT---CC---TAGCTCTCGGTAACCAGAAGT 3823458
Query 43054 TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113
||||||| || | || |||||||| |||||| || || |||| ||||||||||
Sbjct 3823459 ACTACAACGCGACAAATCCATTCGACTTCATGGAGTCGATATCATTGGCCGGCAAGACCA 3823518
Query 43114 ACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||| ||||||||||| || | |||||||||
Sbjct 3823519 ACTTCTTCGAGAAGCGGGTTGGTGACTACCAG 3823550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944339117370320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |