Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq4 129 5e-25
>seq4
Length=4557415
Score = 129 bits (142), Expect = 5e-25
Identities = 264/390 (68%), Gaps = 2/390 (1%)
Strand=Plus/Minus
Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGG 20416
|||||||| || |||| |||||| || || || |||||| | ||||||||||||
Sbjct 3811944 ACATAAAACTGTGCGAACATGTGACACGGTGGTAGTGCCATCTTCTTTAAGTCCGCCGGG 3811885
Query 20417 TTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATG 20476
||||| || | | |||||||| | ||||| ||| || || || | || | ||
Sbjct 3811884 TTCCAAGCGCTGAGGATGATTCTCCGATCGTACGGCTTGTTCTTGAGCTTTTCAATAACC 3811825
Query 20477 TACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCC 20536
| || || || || | ||| || || ||||| |||| | ||| ||||| ||| | ||
Sbjct 3811824 TCCGCCAGCTGATCGACCCCTTGCCCAGTATAATCAGTCTTCGCATCCACATACTCTGCG 3811765
Query 20537 CCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCC 20596
|| || |||| ||| || |||||||| ||||| || | || || | || || |
Sbjct 3811764 CCGAAATGCCGCCATTGAAAACCGTAGACAGGACCTAGGTCGCCGACGTCTCGATGGGAA 3811705
Query 20597 AGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTT 20656
|||||| | | | |||||||| | |||||||| |||||| ||||||| ||| | |
Sbjct 3811704 AGGCCGACGCTGTCGAGGAACTCACGCGAGCCATTGCCGTCCCAGATCTTGATTCCGGCT 3811645
Query 20657 CTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACT-AC 20715
|||||| |||| || || || | |||||||| ||||| ||| | ||
Sbjct 3811644 TCTGAAAGTGGGATGGAAGATGTGCTGCCGGCGATGAACCAAAGTAGCTC-GGCAATGAC 3811586
Query 20716 GCCTCGCCAAAACACCCGCTTTGTGGTTAG 20745
| | || || || |||||||| |||||
Sbjct 3811585 GGCGCGGAGGAAGACTCGCTTTGTTGTTAG 3811556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441372761379880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |