Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq4 129 5e-25 >seq4 Length=4557415 Score = 129 bits (142), Expect = 5e-25 Identities = 264/390 (68%), Gaps = 2/390 (1%) Strand=Plus/Minus Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGG 20416 |||||||| || |||| |||||| || || || |||||| | |||||||||||| Sbjct 3811944 ACATAAAACTGTGCGAACATGTGACACGGTGGTAGTGCCATCTTCTTTAAGTCCGCCGGG 3811885 Query 20417 TTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATG 20476 ||||| || | | |||||||| | ||||| ||| || || || | || | || Sbjct 3811884 TTCCAAGCGCTGAGGATGATTCTCCGATCGTACGGCTTGTTCTTGAGCTTTTCAATAACC 3811825 Query 20477 TACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCC 20536 | || || || || | ||| || || ||||| |||| | ||| ||||| ||| | || Sbjct 3811824 TCCGCCAGCTGATCGACCCCTTGCCCAGTATAATCAGTCTTCGCATCCACATACTCTGCG 3811765 Query 20537 CCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCC 20596 || || |||| ||| || |||||||| ||||| || | || || | || || | Sbjct 3811764 CCGAAATGCCGCCATTGAAAACCGTAGACAGGACCTAGGTCGCCGACGTCTCGATGGGAA 3811705 Query 20597 AGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTT 20656 |||||| | | | |||||||| | |||||||| |||||| ||||||| ||| | | Sbjct 3811704 AGGCCGACGCTGTCGAGGAACTCACGCGAGCCATTGCCGTCCCAGATCTTGATTCCGGCT 3811645 Query 20657 CTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACT-AC 20715 |||||| |||| || || || | |||||||| ||||| ||| | || Sbjct 3811644 TCTGAAAGTGGGATGGAAGATGTGCTGCCGGCGATGAACCAAAGTAGCTC-GGCAATGAC 3811586 Query 20716 GCCTCGCCAAAACACCCGCTTTGTGGTTAG 20745 | | || || || |||||||| ||||| Sbjct 3811585 GGCGCGGAGGAAGACTCGCTTTGTTGTTAG 3811556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441372761379880