Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 >seq2 Length=7009248 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||||| ||| || |||||||||||||| ||||||||||| | ||| ||| Sbjct 3059849 AGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGG 3059790 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| ||||| || ||||| |||| |||||||| ||| ||| | | |||| Sbjct 3059789 CCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCT 3059730 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | ||| | | || | | || ||| | || Sbjct 3059729 TTGTCCTGGATCTTGCTCTTAA-CGTTGTCAATCGTGTCGGAACTCTCAACTTCCAAGGT 3059671 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || |||||||| || || || |||||||| ||||| Sbjct 3059670 GATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062366125614