Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq2 141 2e-28
seq1 120 7e-22
>seq2
Length=7009248
Score = 141 bits (156), Expect = 2e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | ||| || | || | ||||| ||||||||||| || || ||
Sbjct 3059630 CCACCGCGCAGACGAAGAACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTC 3059571
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || |||||||| || || || || |||||||||| |||||||| ||||
Sbjct 3059570 AGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGG 3059511
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || ||||| || ||||| |||| || ||||| || || | || ||||| |||
Sbjct 3059510 ATACCCTCTTTGTCTTGGATCTTCGACTTGACGTTGTCGATTGTGTCTGATGATTCGACT 3059451
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| ||||| || |||||||| || || ||||| ||||| |||||||||
Sbjct 3059450 TCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACGAAGATCTGCATT 3059403
Score = 123 bits (136), Expect = 6e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | ||| || || || | || ||||| || || || || ||||
Sbjct 3059403 TCCACCACGTAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCGGA 3059344
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| || | || || || | || || || || || || |||||||||||| |||
Sbjct 3059343 AAGTGTCCTCCCATCCTCCAGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGTGG 3059284
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
||| |||||||||||||| || |||| ||||| || || || | || ||| || ||
Sbjct 3059283 GATGCCTTCTTTATCCTGTATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCAAC 3059224
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||| || || ||||| || ||||| ||||||||||| ||||||||
Sbjct 3059223 TTCGAGGGTAATAGTCTTGCCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176
Score = 100 bits (110), Expect = 7e-16
Identities = 165/234 (71%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| || || || || ||||| || | ||| | ||||| || || ||||| || || ||
Sbjct 3059861 TGACCGCCACGAAGCCTAAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCC 3059802
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| | ||| || || || || | || || || || || |||| |||||| ||
Sbjct 3059801 GACAACGTTCGGCCATCCTCCAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGC 3059742
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCG---CTCGA 288419
||||| || ||||| |||||||| || ||| || ||||| || || | ||| |||
Sbjct 3059741 GGGATACCCTCTTTGTCCTGGATCTT-GCTCTTAACGTTGTCAATCGTGTCGGAACTC-- 3059685
Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| | ||||||||||| ||||| || |||||||| || ||||||||
Sbjct 3059684 -TCAACTTCCAAGGTGATCGTCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
>seq1
Length=10671843
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| || || || || || || || || || || || ||||||
Sbjct 8978241 TTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGATC 8978300
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
| ||||| || |||||| ||||| || ||||||||||| | ||| || || ||
Sbjct 8978301 AATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGTCG 8978360
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | ||||||||||| || ||||| ||||| ||||| || || || |||||||||||
Sbjct 8978361 ATTGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 8978419
Score = 109 bits (120), Expect = 1e-18
Identities = 172/244 (70%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157
|| || || || | ||| |||||||| | || ||| | || || || || | |||
Sbjct 3823323 GAGGCCGTCACCATCGAGCAAGAGTTCTTGACAGAGGCTCTACCTTGCGCTCTGTTAGGT 3823382
Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217
||||| || | ||| ||||| ||||| |||||||||||||| |||||| | || ||
Sbjct 3823383 ATGAACGCGGGTCTGATGAAGCAATACATCGAATTCGTGGCAGATCGTCTACTCCTAGCT 3823442
Query 269218 CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCG 269277
|||||| | |||| ||||| ||| ||||| |||| ||| ||||| || ||
Sbjct 3823443 CTCGGTAACCAGAAGTACTACAACGCGACAAATCCATTCGACTTCATGGAGTCGATATCA 3823502
Query 269278 CTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCTGGTGT 269336
| | || ||||| ||||||||||| ||||| || | ||||| || | | || |||||
Sbjct 3823503 TTGGCCGGCAAGACCAACTTCTTCGAGAAGCGGGTTGGTGACTACCAGAAGGCC-GGTGT 3823561
Query 269337 AATG 269340
|||
Sbjct 3823562 TATG 3823565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179654294199746
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |