Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq3 154 2e-32
seq1 107 2e-18
>seq3
Length=5817774
Score = 154 bits (170), Expect = 2e-32
Identities = 407/617 (66%), Gaps = 7/617 (1%)
Strand=Plus/Plus
Query 114707 TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAG 114766
|||||||| |||||||| ||||| | || | || || || || | || |||||
Sbjct 3751508 TAGAGGGCCTCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAA 3751567
Query 114767 AAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGA 114826
|| || | ||||| || || ||| ||||||||||||||||| |||||| |||| |||
Sbjct 3751568 AACAGCGTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGA 3751627
Query 114827 GCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 114886
||| ||||||| || || ||| |||| || | || ||||| ||||| |||||
Sbjct 3751628 GCTAAGAAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAG 3751687
Query 114887 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGAC-- 114944
|| || | || ||| |||||||| || || ||||| || |||| | | ||| | |
Sbjct 3751688 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACG-CACCTGGCCGCTT 3751746
Query 114945 --GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGAT 115002
||| | |||| ||||| || || ||| ||| || ||||| ||||| || | |||
Sbjct 3751747 GTTACCTCCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGAT 3751806
Query 115003 ACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGAT 115062
|| | || |||||||| || ||| ||| ||||||||| | ||| |
Sbjct 3751807 CCCGTTGGAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTAC 3751866
Query 115063 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 115122
|| || || || || || ||| ||| || || || || | | | | ||||
Sbjct 3751867 GTTCAGCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTA 3751926
Query 115123 GATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCT 115182
|| || || || ||| | || | |||| ||||| || || ||| || ||
Sbjct 3751927 AATACCCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTG 3751986
Query 115183 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 115241
|| |||||||| |||||||| ||||| | ||||| |||| ||| | ||||||||
Sbjct 3751987 CGGGGTACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAA-GTACTTCTGGGACATGA 3752045
Query 115242 TATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 115301
| |||||||| | ||| ||| || || || ||| || | | || ||||
Sbjct 3752046 GGTTATAGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACACGCA 3752105
Query 115302 TAAACATGTATTGGGGT 115318
| | ||||| ||| |||
Sbjct 3752106 TTATCATGTGTTGAGGT 3752122
>seq1
Length=10671843
Score = 107 bits (118), Expect = 2e-18
Identities = 298/453 (66%), Gaps = 8/453 (2%)
Strand=Plus/Minus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCC 125815
|||||| ||||||||||||||||||||||| ||||| ||| |||| |||||| ||||
Sbjct 3823547 GTAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAA--TGATATCGACTCC 3823490
Query 125816 ATAAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGA 125873
|| || || ||||| || | | ||| | | || | | ||| | || ||| |
Sbjct 3823489 ATGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTACCGAGAGCTAG--GAGTA 3823432
Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 125933
||||||| | ||| | || ||||| | |||| | | ||||||||| | ||
Sbjct 3823431 GACGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGCGTTCATACCTAACAGAG 3823372
Query 125934 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG 125993
|| || || || || | |||| | | ||| || ||||| || | ||
Sbjct 3823371 CGCAAGGTAGAGCCTCTGTCAAGAACTCTTGCTCGATGGTGACGGCCTCAGTAATGACAT 3823312
Query 125994 CGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053
| |||| | | | | |||| ||| | | |||||| ||| || |
Sbjct 3823311 CTTGAACAGCCTGCTTGCTTGGTCGGTTGTTGAGATGAGAGAAGAGGAGGCAGGCGAAGT 3823252
Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113
| || ||||||||||| || ||||| ||||| || |||||| ||| || ||||| |
Sbjct 3823251 CAGTATGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAA 3823192
Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173
|||| |||||||| | |||||| || | | || ||||| |||||||| ||||| |
Sbjct 3823191 GACCGCGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAA 3823132
Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206
|| ||||| |||| || || | ||||||||
Sbjct 3823131 CAGCAGCGAAGGCAACAAGGCGTTGAGCAAAGG 3823099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597353547731560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |