Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 154 2e-32 seq1 107 2e-18 >seq3 Length=5817774 Score = 154 bits (170), Expect = 2e-32 Identities = 407/617 (66%), Gaps = 7/617 (1%) Strand=Plus/Plus Query 114707 TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAG 114766 |||||||| |||||||| ||||| | || | || || || || | || ||||| Sbjct 3751508 TAGAGGGCCTCAAACTCGTCACCGTATACGTCAGCCAGGCCCGGAGCTTCATTGGGGCAA 3751567 Query 114767 AAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGA 114826 || || | ||||| || || ||| ||||||||||||||||| |||||| |||| ||| Sbjct 3751568 AACAGCGTCCATTCGGCATTCTTCTCGACACGCTTCATGAAGAGATCTGGGGTCCAAAGA 3751627 Query 114827 GCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 114886 ||| ||||||| || || ||| |||| || | || ||||| ||||| ||||| Sbjct 3751628 GCTAAGAAGAGGTCACGGGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGCAAGTCCAAG 3751687 Query 114887 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGAC-- 114944 || || | || ||| |||||||| || || ||||| || |||| | | ||| | | Sbjct 3751688 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGACGGCGAACG-CACCTGGCCGCTT 3751746 Query 114945 --GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGAT 115002 ||| | |||| ||||| || || ||| ||| || ||||| ||||| || | ||| Sbjct 3751747 GTTACCTCCTTGGTCGACATATCTTGCGGTGTTATTGAAGACGCGGAGCATAGGCACGAT 3751806 Query 115003 ACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGAT 115062 || | || |||||||| || ||| ||| ||||||||| | ||| | Sbjct 3751807 CCCGTTGGAAGATCCATTTGTGCCGGCAATGTAAGAGCCGGTGGCTCTGATACGATGTAC 3751866 Query 115063 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 115122 || || || || || || ||| ||| || || || || | | | | |||| Sbjct 3751867 GTTCAGCCCGATGCCTCCCGCCGTCTTCGAAATCAAGGCACAGGTCTTCAAGGTATCGTA 3751926 Query 115123 GATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCT 115182 || || || || ||| | || | |||| ||||| || || ||| || || Sbjct 3751927 AATACCCTCAATGCTGTCCTCTTTCATGTCGATGAGGAAACAAGACGCCATCTGCGGTTG 3751986 Query 115183 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 115241 || |||||||| |||||||| ||||| | ||||| |||| ||| | |||||||| Sbjct 3751987 CGGGGTACCAGCATTGAAGAGAGTTGGCGAGGCGTGTGTGAA-GTACTTCTGGGACATGA 3752045 Query 115242 TATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 115301 | |||||||| | ||| ||| || || || ||| || | | || |||| Sbjct 3752046 GGTTATAGGTCTCGAGGACCTTCTCAATATCATCGCCCCAAATGCCAACAGCAACACGCA 3752105 Query 115302 TAAACATGTATTGGGGT 115318 | | ||||| ||| ||| Sbjct 3752106 TTATCATGTGTTGAGGT 3752122 >seq1 Length=10671843 Score = 107 bits (118), Expect = 2e-18 Identities = 298/453 (66%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCC 125815 |||||| ||||||||||||||||||||||| ||||| ||| |||| |||||| |||| Sbjct 3823547 GTAGTCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAA--TGATATCGACTCC 3823490 Query 125816 ATAAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGA 125873 || || || ||||| || | | ||| | | || | | ||| | || ||| | Sbjct 3823489 ATGAAGTCGAATGGATTTGTCGCGTTGTAGTACTTCTGGTTACCGAGAGCTAG--GAGTA 3823432 Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 125933 ||||||| | ||| | || ||||| | |||| | | ||||||||| | || Sbjct 3823431 GACGATCTGCCACGAATTCGATGTATTGCTTCATCAGACCCGCGTTCATACCTAACAGAG 3823372 Query 125934 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG 125993 || || || || || | |||| | | ||| || ||||| || | || Sbjct 3823371 CGCAAGGTAGAGCCTCTGTCAAGAACTCTTGCTCGATGGTGACGGCCTCAGTAATGACAT 3823312 Query 125994 CGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053 | |||| | | | | |||| ||| | | |||||| ||| || | Sbjct 3823311 CTTGAACAGCCTGCTTGCTTGGTCGGTTGTTGAGATGAGAGAAGAGGAGGCAGGCGAAGT 3823252 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | || ||||||||||| || ||||| ||||| || |||||| ||| || ||||| | Sbjct 3823251 CAGTATGAAGACCCTCGTCGCGAGAGATAAGTTCGTTTGAGAAGGTCAGACCCGGCATAA 3823192 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 |||| |||||||| | |||||| || | | || ||||| |||||||| ||||| | Sbjct 3823191 GACCGCGCTTCTTAAGCCAGAAGATGGAAGCGAAAGAACCGCTAAAGAAGATACCCTCAA 3823132 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 || ||||| |||| || || | |||||||| Sbjct 3823131 CAGCAGCGAAGGCAACAAGGCGTTGAGCAAAGG 3823099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353547731560