Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 8e-24
seq1 104 3e-17
>seq2
Length=7009248
Score = 125 bits (138), Expect = 8e-24
Identities = 156/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| |||||||||||||| ||||| || ||||||||| ||| ||||| |||| ||
Sbjct 3059612 ACCAAGTGCAATGTGCTCTCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCC 3059553
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
| |||||| || ||||| || | |||||| ||||| | ||| | | ||| ||||| |
Sbjct 3059552 AACTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGG 3059493
Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
|| || |||| ||| | | | ||||| ||||| || || | ||| || || ||
Sbjct 3059492 ATCTTCGACTTGA-CGTTGTCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCTT 3059434
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| || ||||||||||| ||||| ||||||
Sbjct 3059433 CCCAGTAAGCGTCTTTACGAAGATCTGCATT 3059403
Score = 105 bits (116), Expect = 7e-18
Identities = 154/214 (72%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
||||||||||| ||||||||||| || || |||||||| | || || || | || ||
Sbjct 3059841 CACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAACGTTCGGCCATCCTC 3059782
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||| ||||| || || | ||||||||||| | || | | ||| |||||| |
Sbjct 3059781 CAGCTGCTTCCCAGCAAAAATCAAACGCTGCTGGTCCGGCGGGATACCCTCTTTGTCC-T 3059723
Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGG 42174
| | || | | | ||| | | | ||||||| ||| || || || | ||||| |
Sbjct 3059722 GGATCTTGCTCTTAACGTTGTCAATCGTGTCGGAACTC---TCAACTTCCAAGGTGATCG 3059666
Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || || |||||||| |||||||| |||||
Sbjct 3059665 TCTTTCCGGTAAGCGTCTTGACAAAGATCTGCAT 3059632
Score = 93.3 bits (102), Expect = 5e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||||||||| ||||| |||| |||||| || | || || |||||||| || || ||
Sbjct 3059138 TCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCCTCAAGCTGCTTGCCGGCAAAG 3059079
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| | |||||||| || | || | || |||||||||| ||| || |||| |
Sbjct 3059078 ATCAAGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTG 3059019
Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | || || |||||||| || | |||||||| || || || |||||||| |||
Sbjct 3059018 TCGATGGTATCCGAGGATTCCACCTCCAAGGTGATGGTCTTTCCAGTGAGCGTCTTCACA 3058959
Query 42198 A 42198
|
Sbjct 3058958 A 3058958
>seq1
Length=10671843
Score = 104 bits (114), Expect = 3e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| || | || || || | || || | |||||| || || || |
Sbjct 8978239 CCTTCTGGATGTTGTAGTCGGAAAGTGTACGGCCATCCTCCAACTGCTTGCCCGCAAAGA 8978298
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| | |||||||||||| | ||| | || ||||||||| |||||| ||||| |
Sbjct 8978299 TCAATCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTGGATTTGACATTGT 8978358
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | |||||||||||||| || |||| |||||||| || ||||| || ||||| || |
Sbjct 8978359 CGATTGTGTCGCTCGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGA 8978418
Query 42199 AG 42200
||
Sbjct 8978419 AG 8978420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212752468880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |