Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq2 100 3e-16
>seq2
Length=7009248
Score = 100 bits (110), Expect = 3e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | || || ||||| |||||||||||||| | | || | | | ||
Sbjct 3059388 AAGGACAAGGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCGGAAAGTGTCCTCCCATC 3059329
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| ||||||||||||||| | ||||| ||||| || || || || || |||||||| ||
Sbjct 3059328 CTCCAGCTGCTTGCCGGCAAATATGAGACGCTGTTGATCCGGTGGGATGCCTTCTTTATC 3059269
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
||||| || ||| ||| || | || || | || ||||| | || | ||
Sbjct 3059268 CTGTATCTTCGACTTCACATTGTCGATGGTGTCTGACGACTCAACTTCGAGGGTAATAGT 3059209
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||| |||| || || ||||| || |||||
Sbjct 3059208 CTTGCCAGTCAGTGTCTTGACGAAGATCTGCAT 3059176
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| || | | ||| || || |||| || ||||| |||||||||||||| || |
Sbjct 3059175 ACCGCCACGGAGACGAAGGACGAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGA 3059116
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | || |||||||||||||||||| | || | |||||||| || |||||
Sbjct 3059115 CAGAGTACGTCCATCCTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGATCTGGAGG 3059056
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || || || || || ||| ||| || | ||||| || |||||
Sbjct 3059055 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTATCCGAGGATTCCAC 3058996
Query 64396 TTCTACAGTTACGGTCTTGCCGGT 64419
|| | || | |||||| || ||
Sbjct 3058995 CTCCAAGGTGATGGTCTTTCCAGT 3058972
Score = 86.0 bits (94), Expect = 6e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312
|||||||| ||||||||||| | || || ||||||| | |||||||||||| |
Sbjct 3059594 TCTTTTTGGATGTTGTAATCACTCAGTGTCCGGCCGTCTTCCAACTGCTTGCCGGCGAAG 3059535
Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372
|| | ||||| ||||| || || || || ||||| ||||| || || ||| ||
Sbjct 3059534 ATCAATCGCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTCGACTTGACGTTG 3059475
Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432
|| | ||| || | || ||||| | |||| ||||| || || | || ||||||
Sbjct 3059474 TCGATTGTGTCTGATGATTCGACTTCCAGCGTTATTGTCTTCCCAGTAAGCGTCTTTACG 3059415
Query 64433 AAAATTTGCATT 64444
|| || ||||||
Sbjct 3059414 AAGATCTGCATT 3059403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499644756281080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |