Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3 192 6e-44 >seq3 Length=5817774 Score = 192 bits (212), Expect = 6e-44 Identities = 338/488 (69%), Gaps = 6/488 (1%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| | || || || ||||| || || |||||| || |||||| | || |||||||| Sbjct 3752019 GCCTCGCCAACTCTCTTCAATGCTGGTACCCCGCAACCGCAGATGGCGTCTTGTTTCCTC 3751960 Query 93952 AT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 || ||| | || | ||| ||| || |||| ||| | | | ||| |||||| Sbjct 3751959 ATCGAC-ATGAAAGAGGACAGCATTGAGGGTATTTACGATACCTTGAAGACCTGTGCCTT 3751901 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTAC--GTGCCAGGGGT 94068 || || || ||||| || |||||| | | || || |||| | |||| || Sbjct 3751900 GATTTCGAAGACGGCGGGAGGCATCGGGCTGAACGTACAT--CGTATCAGAGCCACCGGC 3751843 Query 94069 TCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTC 94128 || ||||| ||| || ||||| | |||||||| |||| ||||||||||| |||||| Sbjct 3751842 TCTTACATTGCCGGCACAAATGGATCTTCCAACGGGATCGTGCCTATGCTCCGCGTCTTC 3751783 Query 94129 AACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTC 94188 || ||| | || | || || ||||| || ||| | | || ||| | ||||| ||| Sbjct 3751782 AATAACACCGCAAGATATGTCGACCAAGGAGGTAACAAGCGGCCAGGTGCGTTCGCCGTC 3751723 Query 94189 TATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGC 94248 || || |||||||||||||| || || | ||| | ||| |||| ||||| |||||| Sbjct 3751722 TACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCTTGGACTTGCGCAAGAATCACGGC 3751663 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || || | | ||| | |||||||||| ||||| ||| ||||| || || ||| Sbjct 3751662 AAGGAGGAAGTCCGCGCCCGTGACCTCTTCTTAGCTCTTTGGACCCCAGATCTCTTCATG 3751603 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || || |||||||| || ||| |||| || ||||| ||||||||| ||| || ||| Sbjct 3751602 AAGCGTGTCGAGAAGAATGCCGAATGGACGCTGTTTTGCCCCAATGAAGCTCCGGGCCTG 3751543 Query 94369 TCCGACGT 94376 | ||||| Sbjct 3751542 GCTGACGT 3751535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723156711720