Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq3 192 6e-44
>seq3
Length=5817774
Score = 192 bits (212), Expect = 6e-44
Identities = 338/488 (69%), Gaps = 6/488 (1%)
Strand=Plus/Minus
Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951
||| | || || || ||||| || || |||||| || |||||| | || ||||||||
Sbjct 3752019 GCCTCGCCAACTCTCTTCAATGCTGGTACCCCGCAACCGCAGATGGCGTCTTGTTTCCTC 3751960
Query 93952 AT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010
|| ||| | || | ||| ||| || |||| ||| | | | ||| ||||||
Sbjct 3751959 ATCGAC-ATGAAAGAGGACAGCATTGAGGGTATTTACGATACCTTGAAGACCTGTGCCTT 3751901
Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTAC--GTGCCAGGGGT 94068
|| || || ||||| || |||||| | | || || |||| | |||| ||
Sbjct 3751900 GATTTCGAAGACGGCGGGAGGCATCGGGCTGAACGTACAT--CGTATCAGAGCCACCGGC 3751843
Query 94069 TCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTC 94128
|| ||||| ||| || ||||| | |||||||| |||| ||||||||||| ||||||
Sbjct 3751842 TCTTACATTGCCGGCACAAATGGATCTTCCAACGGGATCGTGCCTATGCTCCGCGTCTTC 3751783
Query 94129 AACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTC 94188
|| ||| | || | || || ||||| || ||| | | || ||| | ||||| |||
Sbjct 3751782 AATAACACCGCAAGATATGTCGACCAAGGAGGTAACAAGCGGCCAGGTGCGTTCGCCGTC 3751723
Query 94189 TATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGC 94248
|| || |||||||||||||| || || | ||| | ||| |||| ||||| ||||||
Sbjct 3751722 TACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCTTGGACTTGCGCAAGAATCACGGC 3751663
Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308
|| || | | ||| | |||||||||| ||||| ||| ||||| || || |||
Sbjct 3751662 AAGGAGGAAGTCCGCGCCCGTGACCTCTTCTTAGCTCTTTGGACCCCAGATCTCTTCATG 3751603
Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368
|| || |||||||| || ||| |||| || ||||| ||||||||| ||| || |||
Sbjct 3751602 AAGCGTGTCGAGAAGAATGCCGAATGGACGCTGTTTTGCCCCAATGAAGCTCCGGGCCTG 3751543
Query 94369 TCCGACGT 94376
| |||||
Sbjct 3751542 GCTGACGT 3751535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494723156711720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |